Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1145 ATGCATGATAACATCATTGTCTTTCCCAAGCGAAACCCCCAATTCATTCTTCCACAAAACCCTAACAATCAACAGATGGGTGAGCAATTCCACTCAGAGTCCCATGAACCCTTCACTACTCTATTACAACCCACCTCTACTACGGAAGCCGAATCCACCATCACCACCGTCACCGCCGATGATATTTCCCTACAAGCCTCATCTTCTTCCAAACTTCCGTTCCGATCCCGGAAGATCAGAAAGATTTCTTCCGCCGCCACGCCCAGCGGCTCTGACGGAAAATCTGAGCCAGTCTCTGAGGATGATTTGTTAAAAGGCGGCAATAGAGCCTGGAAGAGAAACGCAGCACAGTCAACTGCGGCTTTACCCACAATTGTGAAGCCATTGTCGTGTGAAGGCGAACTCGATGTGGCGCTTCGGCATCTGACCAAGTCCGATCCACTTCTCGCTGCCTTGATCAACACTCACCAGCCGCCGACTTTCGATTCTTGTCACCCTCCATTTCTTGCCCTGGCCAAAAGCATTTTATACCAACAACTGGCCTACAAGGCCGCGACCTCAATCTACACTCGCTTCGTCGCGCTTTGTGGTGGCGAGGCCGGTGTTGTTCCCGACGCCGTGCTAGCCCTCTCGCCGTCGCAGCTCCGGCAAATTGGAGTCTCTGGTCGAAAAGCTGGTTATCTTCACGACCTCGCTAGCAAGTACAAGACTGGAATTCTGTCTGACTCATCAATTATGGGAATGGATGATAAGTCACTCTTCACAATGCTCACCATGGTTAAGGGAATTGGATCTTGGTCCGTACACATGTTCATGATTTTCTCGCTCCATAGACCAGACGTTCTTCCAGTAGGAGATGTTGGTGTACGTAAGGGCGTGCAATTTTTATATGGATTGGAAGAATTGCCACGGCCATCGCAGATGGAGCAGCTATGTGAGAAGTGGAAACCTTATCGGTCTGTTGGGTCATGGTACATGTGGAGGTTTGTTGAGGCAAAAGGTGCCCCACCGGCCAGGGCGGCTGTCGCATTGGTCGATGGTGCTACCTCGGAGCAGCAACAGCAACAGGAGCAACAACAGCAGCCACAACAGCTTCAGCTTGTGGATCCCATCAACGGCATTGTGAACCTCGGGGCCTGCATTTGGGGACAATGA 1155 0.5126 MHDNIIVFPKRNPQFILPQNPNNQQMGEQFHSESHEPFTTLLQPTSTTEAESTITTVTADDISLQASSSSKLPFRSRKIRKISSAATPSGSDGKSEPVSEDDLLKGGNRAWKRNAAQSTAALPTIVKPLSCEGELDVALRHLTKSDPLLAALINTHQPPTFDSCHPPFLALAKSILYQQLAYKAATSIYTRFVALCGGEAGVVPDAVLALSPSQLRQIGVSGRKAGYLHDLASKYKTGILSDSSIMGMDDKSLFTMLTMVKGIGSWSVHMFMIFSLHRPDVLPVGDVGVRKGVQFLYGLEELPRPSQMEQLCEKWKPYRSVGSWYMWRFVEAKGAPPARAAVALVDGATSEQQQQQEQQQQPQQLQLVDPINGIVNLGACIWGQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1145 384 CDD ENDO3c 168 329 IPR003265 GO:0006284
Vvi4g1145 384 FunFam DNA-3-methyladenine glycosylase II 164 278 - -
Vvi4g1145 384 Gene3D - 140 328 - -
Vvi4g1145 384 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 43 339 - -
Vvi4g1145 384 SUPERFAMILY DNA-glycosylase 158 329 IPR011257 GO:0003824|GO:0006281
Vvi4g1145 384 SMART endo3end 176 331 IPR003265 GO:0006284
Vvi4g1145 384 MobiDBLite consensus disorder prediction 82 104 - -
Vvi4g1145 384 FunFam Probable DNA-3-methyladenine glycosylase 2 259 328 - -
Vvi4g1145 384 Gene3D Hypothetical protein; domain 2 165 278 - -
Vvi4g1145 384 Pfam HhH-GPD superfamily base excision DNA repair protein 173 316 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1145 Vvi-Chr4 18439867 18444237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1145 K01247 - vvi:100252980 733.021