Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1144 ATGAGTTTCAGGGAAGAAGAGGATGGGCGAGATCTTCGCAAGCCCTTTCTCCACACCGGAAGCTGGTACCGGATGGGCTCCCGGCAATCCAGCATTATGGGATCCTCCGCGCAGATCATCCGCGACAACTCCGTCTCCGTCCTCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCTGTGGGTATTCTTCTCCTACGCAATCTGAGATCATCAGTGATCTTGGACTTTCCCTTTCAGAGTTCTCTATTTTTGGTTCGTTGTCAAATGTGGGGGCCATGGTTGGGGCAATAGCCAGTGGTCAGATTGCGGAATACATCGGCAGGAAAGGGTCACTAATGATTGCTTCGATTCCTAATATAATAGGATGGCTTGCAATATCATTTGCCCAAGATTCATCATTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTAGGATCTGTTAACCAGCTCTCAGTTACTCTTGGAATACTATTGGCATATGTGTTGGGACTTTTTGTTAATTGGAGGGTACTTGCAGTTTTAGGAATTTTGCCATGCACAATATTGATACCTGGTCTATTTTTCATACCAGAATCTCCTCGTTGGCTGGCCAAAATGGGAATGACAGAAGATTTTGAAGCATCTTTGCAAGTTCTACGGGGATTTGATACCGACATTTCTGTTGAGGTGACTGAAATCAAGAGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATGGTAGGGATTGGATTACTCATGCTCCAGCAACTCAGTGGTATCAATGGTGTTCTATTCTATTCCAGTAATATCTTTGAAGCTGCTGGGATTTCATCGAGTGATATTGCAACAGTTGGACTTGGGGTTATTCAGGTCATTGCCACTGGGGTCACTACTTGGTTGGTGGACAAAGCTGGGCGCAGGCTTCTTCTCATAGTATCCTCCTCTGGAATGACTCTTAGCCTCCTCCTTGTCTCAGTTGCATTTTACCTGAAGGATGTCATTTCAGAAGACTCTCGATTTTATAGCATATTGGGAATCCTTTCACTTGTTGGGCTTGTGGCTTTGGTAATTACCTTCTCTCTAGGAGTTGGAGCCATTCCTTGGGTTATAATGTCCGAGATACTTCCAGTGAGTATTAAAGGACTTGCAGGCAGCATCGCAACATTGGCAAATTGGCTAACATCATGGGCAGTTACAATGACTGCAAACCTACTCCTGAGTTGGAGCAAAGGAGGGACCTTCGCTATTTACACATTAATGACTGCTTTTACCATAGTGTTTGTGACACTTTGGGTCCCTGAAACCAAAGGAAGAACCCTGGAAGAAATTCAGCGGTCCTTCAGATGA 1461 0.449 MSFREEEDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPIQFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQLSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASLQVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGINGVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSLLLVSVAFYLKDVISEDSRFYSILGILSLVGLVALVITFSLGVGAIPWVIMSEILPVSIKGLAGSIATLANWLTSWAVTMTANLLLSWSKGGTFAIYTLMTAFTIVFVTLWVPETKGRTLEEIQRSFR* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1144 486 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 474 IPR020846 GO:0022857
Vvi4g1144 486 NCBIfam sugar porter family MFS transporter 39 481 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 ProSitePatterns Sugar transport proteins signature 1. 104 121 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 Pfam Sugar (and other) transporter 51 485 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 PRINTS Sugar transporter signature 387 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 PRINTS Sugar transporter signature 410 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 PRINTS Sugar transporter signature 58 68 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 FunFam sugar transporter ERD6-like 6 41 485 - -
Vvi4g1144 486 CDD MFS_GLUT6_8_Class3_like 48 480 IPR044775 GO:0008643|GO:0051119
Vvi4g1144 486 SUPERFAMILY MFS general substrate transporter 51 482 IPR036259 -
Vvi4g1144 486 Gene3D MFS general substrate transporter like domains 41 486 IPR036259 -
Vvi4g1144 486 ProSitePatterns Sugar transport proteins signature 2. 146 171 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vvi4g1144 486 PANTHER - 36 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1144 Vvi-Chr4 18431023 18437687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1144 1 486 Organic Solute Cotransporters AT1G75220 78.689 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1144 K03444 - vvi:100263259 937.176