Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1141 ATGGATTCTGATACGATTATGGAACCGATGGATTTGAAGGTGCGAGAGCTGTTGAAGGAGGTACAGCTCGACTACTCTTCTGCAACAACAAAGCTCGTCGACGACACCGTTTCAGCCATTAAACAAGCCATCGATACAATCCCTGAAGACTTGAAGGTTACAGCAGATTTTGCTCCACAATTTGTCAGAGACATTGGCGCTGATAAAGTTGAATTCAACTTCAAGAAGCCAAAATTATTCGAAATTGGTGGTAGTTATTCAATACGCTGTGTGGCAAAGCCTGATGTAGATATTGATCTTTTTGTTAGGTTGCCAAAGGAGTGTTTCCATGAGAAGGACTATTTGAATCACCGTTACCATGCAAAAAGGTTCCTCTATCTCTGCATAATCAAGAAGTATTTGAACTCTTCTTCCTTCATTCGAAAGGTTGAATGGTCCACCCTACAAAATGAGGCTCGAAAACCAGTATTGGTTGTCTATCCAGCTATGGAGCTTGCTGAAGTTCCTGGGCTTTCTGTGAGAATAATACCTACGGCAACATCCCTGTTTAGTATTTTGAAGTTAAACTTGAAGCGGAACAATGTTTGTTCTTTGAAGCAAGATGAGAGTACTCCTCAGGCTACACCAAAATACAATAGTAGTATTTTGGAAGACATGTTTCTAGAGGACAATGCGGAATTTGTGAAGCGAACTTTTCTTGGTTGGAAGGAGTTGGGGGAGGCTTTAATTTTGCTTAAGGTATGGGCTCGGCAGAGAAGTTCGATATATGCTTATGATTGCTTAAATGGATTTCTGATCTCTGTCATAATGTCATACCTTGCAACGGATTCTGGAAGGAATCTCATTAACAATTCAATGAAGCCAATGCAGATATTTCGTGTGACCTTGGATTTCATTGCCACATCTAAGCTATGGAATACTGGTCTTTATTTCAAGTCTCAAAGCCTACTGAATATTTCAAAGGAGGAGTTGCTGGAAAGGAAGCAATATTTAAGATTATTTCCTGTAGTTATATCTGAGTCACTTGCTCATTTTAATTTGGCGTTCCGGATTACAGGAGGTGGCTTTTTGGAGCTCCAAGATGAGGCTGTTTTGACCCTTAGTTGCATAGGCAAATGTAAAGATGGTGGGTTTGAGGAGCTTTTTATGACTAAGATTGACTATCCAGCTAAATATGACTACTGCATGAGATTGAATTTGAAAGGAAATAGTGATGTTTATGCATTGGGGTTTTGCTTGGATGAGGAATGTTGGAGATCCTTTGAGCAGAAAGTTCATTTTCTTCTGTGTCAAGGATTGAGTGATAGAGCAAAGTTCATCCGTGTTAGCTGGAAAAATGCCACTTCAGAATGCAATGTGGAAAATGGTTTATCAATCTTTGATCGAGAGCCATTGCTCATTGGGATTTCAGTCAGCTCTTTAGAGAAAGCTTTTAGAGTGGTCGATGTTGGTCCAAATGCTGAGCATAAAGATGAGGCTCTTAAATTCCGGAAGTTTTGGGGAGAGAAAGCAGAGCTTCGAAGATTTAAAGATGGGATGATTGCAGAAAGCACAGTATGGGAAAGCAAGCAATGGGAAAGGCATACCATCATAAAAAGGATTACCGAATATCTCCTTTTGCGGCACCTTTCCTTGTCAGAAAGAAATATCGTGCATATTGTAGATCAACTTGATTTCTCTCTGGTTAATGGTGTTGGAGATTCTATCTCATTTTCTGGAAGTTTGCTTGAGGCATTTGAAGTGTTGTCAAAGCGATTACATCTTCTCAAAGACATTCCTTTGAAGGTGTCTAGTGTGCAGCCTTTAGATTCAGCTTTCAGGTTTACATCTGTCTTCCCTCCTGAACCTCATCCCCTAGCCAACGAAAAGAGTGCTGTTCCTAGATTAAATAAGCTCACTTCAACCTGTATTCAACCATTGGAAGTTATGATTCAGTTGGAAGGTTCAGGCAACTGGCCAATGGATGATGTAGCTATTGAGAAGACTAAATCTGCTTTCCTTCTAAGAATTGGAGAAAGTCTCCAGAACAATTGGGGTATGATCTGCACTGCTACTGAGGAAAATGTGGATGTTTTTATGTCTGGATATGCATTTCGTCTTAGAATTTTGCATGAAAGAGGCCTGAGTTTGTTGAATAGGCAAAATGGGAGTAATCAACTGAAGCATATTTCTTCTGTTGACAAGGAACTTTTTACCCGTGGCCAGCATTCTAGCATGATTAATGGTCTACAGGGTTGTTACCCAATATATGGGCCAGTTGTTCGGCTAGCGAAGCGATGGGTTGCTTCGCATCTCTTTTCAGCTTGCTTGGTCGAGGAGGCAGTTGAGCTATTGGTTGCATATCTCTTTTTGAAGCCTTTACCATTTTATGTGCCTTGCTCTCGGATATCAGGATTTCTAAGGTTCTTACGGTTATTATCAGAGTATGACTGGAATTTCTCTGCTTTGGTGGTTGACATAAATAGTGATTTGAGCCCAAGTGATGAAAAAGAGATTAATGAGAATTTTACTTCAAGTAGAAAAGGTTATGAAGAAAATGCCCAAAATGTAAACCCGGCAATGTTCTTAGCAACAGCTTATGATAAGGCATCTGAAGCTTGGACCAGATTCTCACCAAACTCATCAGAGCTTAGAAGGTTGGTGGCCTATGCCCGAAGCAGTGCAAACCTATTGACTAAACTTATTTTGGGGGGTCAAATTGATTCTTACAAATGGGAGTGTCTTTTCCGTACTCCCTTGAACAACTATGATGCTGTAATTCTTCTCCACAGGGAGAAAATGCCTTATCCCCAACGTCTTCTCTTCCCATCTGAGATGAACCAAGGGAAGCATGTTGCTCAGGGCAATGCTAGCAAGGCTTTTCATCCATTTTTGTTGCCTGAACACATGAAAGGAAACTCCCCAGATTTGAAAGATACGCTACTGGTAGACTTTGATCCACTGAGGTGCTTCATTGGGGATTTAGAGGAAGAGTTTCCAAACGCTTTCAAGTTGTGGTACGATTCTCTAGGAGGTGATGCCATTGGCATGATGTGGGAGAGATCATCTTCAAAGAAACGGGGACGAAGTGAAGAGAATGAGGAGGAAAAAGATCCAGTCAATGTGCTAAAAGCTGTCGGTGAGGTCGGGAAAGGGTTTGTGAGGAGTATTTATCTACTCAAGTCCCCAAGGCTCAGGAACTGA 3183 0.4106 MDSDTIMEPMDLKVRELLKEVQLDYSSATTKLVDDTVSAIKQAIDTIPEDLKVTADFAPQFVRDIGADKVEFNFKKPKLFEIGGSYSIRCVAKPDVDIDLFVRLPKECFHEKDYLNHRYHAKRFLYLCIIKKYLNSSSFIRKVEWSTLQNEARKPVLVVYPAMELAEVPGLSVRIIPTATSLFSILKLNLKRNNVCSLKQDESTPQATPKYNSSILEDMFLEDNAEFVKRTFLGWKELGEALILLKVWARQRSSIYAYDCLNGFLISVIMSYLATDSGRNLINNSMKPMQIFRVTLDFIATSKLWNTGLYFKSQSLLNISKEELLERKQYLRLFPVVISESLAHFNLAFRITGGGFLELQDEAVLTLSCIGKCKDGGFEELFMTKIDYPAKYDYCMRLNLKGNSDVYALGFCLDEECWRSFEQKVHFLLCQGLSDRAKFIRVSWKNATSECNVENGLSIFDREPLLIGISVSSLEKAFRVVDVGPNAEHKDEALKFRKFWGEKAELRRFKDGMIAESTVWESKQWERHTIIKRITEYLLLRHLSLSERNIVHIVDQLDFSLVNGVGDSISFSGSLLEAFEVLSKRLHLLKDIPLKVSSVQPLDSAFRFTSVFPPEPHPLANEKSAVPRLNKLTSTCIQPLEVMIQLEGSGNWPMDDVAIEKTKSAFLLRIGESLQNNWGMICTATEENVDVFMSGYAFRLRILHERGLSLLNRQNGSNQLKHISSVDKELFTRGQHSSMINGLQGCYPIYGPVVRLAKRWVASHLFSACLVEEAVELLVAYLFLKPLPFYVPCSRISGFLRFLRLLSEYDWNFSALVVDINSDLSPSDEKEINENFTSSRKGYEENAQNVNPAMFLATAYDKASEAWTRFSPNSSELRRLVAYARSSANLLTKLILGGQIDSYKWECLFRTPLNNYDAVILLHREKMPYPQRLLFPSEMNQGKHVAQGNASKAFHPFLLPEHMKGNSPDLKDTLLVDFDPLRCFIGDLEEEFPNAFKLWYDSLGGDAIGMMWERSSSKKRGRSEENEEEKDPVNVLKAVGEVGKGFVRSIYLLKSPRLRN* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1141 1060 Pfam Nrap protein domain 3 390 543 IPR035368 -
Vvi4g1141 1060 Pfam Nrap protein domain 6 913 1050 IPR035371 -
Vvi4g1141 1060 Pfam Nrap protein PAP/OAS-like domain 239 385 IPR035367 -
Vvi4g1141 1060 FunFam Nucleolar protein 6 211 388 - -
Vvi4g1141 1060 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 9 1051 IPR005554 -
Vvi4g1141 1060 Pfam Nrap protein nucleotidyltransferase domain 4 572 744 IPR035369 -
Vvi4g1141 1060 Pfam Nrap protein PAP/OAS1-like domain 5 747 900 IPR035370 -
Vvi4g1141 1060 Gene3D - 198 388 - -
Vvi4g1141 1060 Pfam Nrap protein domain 1 98 231 IPR035082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1141 Vvi-Chr4 18401628 18413421 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1141 K14544 - vvi:100242719 2103.56