Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1140 ATGGGGCTTCTCAGCATCATTAGAAAAATCAAGAGAAAAGAGAAGGAAATGCGTATACTCATGGTGGGTCTTGATAATTCAGGGAAGACTACAATTGTGTTGAAAATCAATGGAGAGGACACTAGTGTTATCAGTCCCACCCTCGGCTTCAATATCAAAACCATCACCTACCACAAGTATACTCTTAATATATGGGATGTTGGGGGCCAAAGAACCATAAGATCTTACTGGAGAAACTACTTCGAACAAACTGATGGTTTGGTATGGGTCGTTGATAGTTCAGATCTTAGAAGGTTAGACGATTGCAAAATGGAACTGGATAACCTTTTGAAGGAAGAGAGGCTGTCGGGAGCATCCTTGCTGATACTAGCAAATAAGCAAGATATAAATGGAGCTCTTACACCAGCAGAAATAGCTAAGGTCCTCAACTTAGAAGCTATGGACAAAACCAGGCATTGGAAAATTGTGGGCTGCAGCGCAATCACGGGTGAAGGGCTTCTTGAGGGATTTGATTGGTTGGTCCAGGATATTGCCTCTCGAATCTATGTGCTTGACTAA 558 0.4229 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPAEIAKVLNLEAMDKTRHWKIVGCSAITGEGLLEGFDWLVQDIASRIYVLD* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1140 185 ProSiteProfiles small GTPase Arf family profile. 10 177 - -
Vvi4g1140 185 NCBIfam small GTP-binding protein domain 15 150 IPR005225 GO:0005525
Vvi4g1140 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 1 177 IPR044612 GO:0003924
Vvi4g1140 185 SMART arf_sub_2 1 181 - -
Vvi4g1140 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 179 IPR027417 -
Vvi4g1140 185 FunFam ADP-ribosylation factor-like 2, arl2 4 182 - -
Vvi4g1140 185 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Vvi4g1140 185 Pfam ADP-ribosylation factor family 4 177 IPR006689 GO:0003924|GO:0005525
Vvi4g1140 185 SMART rab_sub_5 17 180 - -
Vvi4g1140 185 Gene3D - 5 182 IPR027417 -
Vvi4g1140 185 CDD Arl2 3 176 IPR045873 GO:0003924
Vvi4g1140 185 PRINTS GTP-binding SAR1 protein signature 46 70 IPR006689 GO:0003924|GO:0005525
Vvi4g1140 185 PRINTS GTP-binding SAR1 protein signature 73 98 IPR006689 GO:0003924|GO:0005525
Vvi4g1140 185 PRINTS GTP-binding SAR1 protein signature 18 41 IPR006689 GO:0003924|GO:0005525
Vvi4g1140 185 PRINTS GTP-binding SAR1 protein signature 151 175 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1140 Vvi-Chr4 18396869 18400309 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1140 K07943 - vvi:100252991 357.066