Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1139 ATGGAGGCCAAATTCTTTCGGTTTCTGAAGATAGTAGGCGTGGGGTTCAAAGCGAGAGCTGAATCGGAGGGTCGCCTCCTGTTTCTGAAATTGGGGTACAGCCACGAGGTAGAACTTACTGTACCTCCCGCAGTACGTGTGTTCTGCTTCAAACCAAACATAGTGTGCTGCACTGGGATTGACAAGCAAAGGGTGCACCAGTTTGCTGCTGCTGTTCGCAGTTGTAAGCCTCCGGAAGTTTACAAAGGCAAGGGTATCATGTACATTGATGAAGTTATCAAGAAGAAACAGGGAAAGAAATCTAAATGA 309 0.4693 MEAKFFRFLKIVGVGFKARAESEGRLLFLKLGYSHEVELTVPPAVRVFCFKPNIVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1139 102 PRINTS Ribosomal protein L6 signature 65 86 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi4g1139 102 PRINTS Ribosomal protein L6 signature 23 39 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi4g1139 102 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 100 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi4g1139 102 Pfam Ribosomal protein L6 13 88 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi4g1139 102 ProSitePatterns Ribosomal protein L6 signature 1. 78 86 IPR002358 GO:0003735|GO:0005840|GO:0006412
Vvi4g1139 102 Gene3D - 5 102 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi4g1139 102 FunFam 60S ribosomal protein L6 5 102 - -
Vvi4g1139 102 SUPERFAMILY Ribosomal protein L6 5 100 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1139 Vvi-Chr4 18395623 18395931 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1139 K02933 - vvi:100247870 209.92