Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1136 ATGTGGCGAAGGGGTTTTAGCAGCAGCGCCGGCTGCAGTAACGCATTGAAGGAGAAGAAATGGGACGCGCTGGTAATCGGTGCCGGCCACAACGGCCTAACCGCCGGCGCATACCTGGCTCGCGCTGGTCTCTCTGTTGCTGTTCTCGAACGTCGCCACATCATAGGCGGCGCGGCCGTCACAGAAGAAATTATCCCTGGCTTTAAGTTCTCCCGATGCAGCTACCTCCAGAGCCTCCTCCGCCCCTCCGTCATCAAGGAATTAGAGTTAGCAAGACATGGATTAAAGTTGTTGAAGAGGAATCCTTCATCCTTCACGCCTTGTGTTGATGGGCGGTATCTTCTCTTAGGCCCTGATAAGGACCTTAATTATTCTGAGATTTCAAAGTTCTCCAAACGAGATGCTGATGCCTATTTAAGATATGAGAATCAGCTAGAGAACTTCTGTAAACTCATGGATCCGCTTTTGGATTCACCTCCTCCTGAAACCATGCAAGGGCTTTCATCATTTAATGACCGCATCAAGAATAATGTACGCAAATCAGTTTTTTGGGCTCATTGTCTGCGTTCGGCACTCTCATTGGGACAAAAAGATTTGGTGGACTTCATGGACCTTTTATTGGCCCCTGCATCAAAAGTTTTGAATAACTGGTTTGAGACTGATGTCCTGAAGGCAACACTTGCAACAGATGCTGTGATTGGAAGTACAGGAAGTGTCCACACACCTGGGAGTGGATATGTTCTGCTACATCATGTGATGGGAGAAACCGATGGTGATCGTGGTATTTGGTCGTATGTTGAAGGTGGTATGGGCTCAGTATCCTTGGCTATTAGCAAGGCTGCTAAGGAAGCTGGGGCTCATGTTGTAACAAGTGCAGAGGTTTCACAGTTGATGATTGAGGACTCGGGCAGAGTAAATGGGGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGGAATTTGTACCTGAAAATGTCCTTCCTGATGATTTTCTCCGTGCTATTAAGTACTCTGACTACAGCTCTGGAACTACCAAAATGAACTTAGCTGTTGATACATTGCCTCAATTTCAGTGTTGCAAATTGAGCCACCCTGATGCAGGTCCTCAACATGTGGGTACCATTCACATTGGTTCTGAGAGTATGGAGGAGATTGACTCAGCTAGTCAAGATGCTACGAATGGCATACCATCACAGAGACCAATTATCGAGATGACAATTCCTTCTGTATTGGACAAGACTATTTCTCCACCTGGTCAGCATGTGATCAACTTATTTATTCAATACACACCCTATAAACCTTTGGATGGCAGCTGGGAAGATCCTGCATATAGAGAATTATTTGCACAAAGATGTTTCAACTTGATCGATGAATATGCCCCTGGTTTCAGCTCAACAATACTTGGCTATGACATGCTGACTCCACCAGACCTTGAAAGGGAAATTGGTCTCACAGGAGGGAATATCTTTCATGGTGCCATGGGGTTGGATTCTCTCTTCCTCATGCGACCTGTAAAAGGATGGTCAAACTACAGAACTCCACTGCAGGGGCTTTATTTGTGCGGGAGTGGGGCTCATCCTGGGGGTGGTGTGATGGGTGCCCCTGGTCGTAATGCCGCGTCTGTGGTACTTGAAGATGTTAAGAAATCATTCAACTGA 1698 0.4653 MWRRGFSSSAGCSNALKEKKWDALVIGAGHNGLTAGAYLARAGLSVAVLERRHIIGGAAVTEEIIPGFKFSRCSYLQSLLRPSVIKELELARHGLKLLKRNPSSFTPCVDGRYLLLGPDKDLNYSEISKFSKRDADAYLRYENQLENFCKLMDPLLDSPPPETMQGLSSFNDRIKNNVRKSVFWAHCLRSALSLGQKDLVDFMDLLLAPASKVLNNWFETDVLKATLATDAVIGSTGSVHTPGSGYVLLHHVMGETDGDRGIWSYVEGGMGSVSLAISKAAKEAGAHVVTSAEVSQLMIEDSGRVNGVLLADGTRVHSSVVLSNATPYKTFMEFVPENVLPDDFLRAIKYSDYSSGTTKMNLAVDTLPQFQCCKLSHPDAGPQHVGTIHIGSESMEEIDSASQDATNGIPSQRPIIEMTIPSVLDKTISPPGQHVINLFIQYTPYKPLDGSWEDPAYRELFAQRCFNLIDEYAPGFSSTILGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYLCGSGAHPGGGVMGAPGRNAASVVLEDVKKSFN* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1136 565 Pfam Flavin containing amine oxidoreductase 238 366 IPR002937 GO:0016491
Vvi4g1136 565 Gene3D - 20 113 IPR036188 -
Vvi4g1136 565 Gene3D - 222 370 IPR036188 -
Vvi4g1136 565 Pfam NAD(P)-binding Rossmann-like domain 25 70 - -
Vvi4g1136 565 PANTHER PHYTOENE DEHYDROGENASE 14 562 - -
Vvi4g1136 565 SUPERFAMILY FAD/NAD(P)-binding domain 19 438 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1136 Vvi-Chr4 18354476 18369892 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1136 - - vvi:100259816 1143.26