Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1133 ATGGTACACAGTGCCTATGATTCCTTCGAGCTCCTCAATAATTGTCCGACCAGGATCGAGACCATCGAATCGTACGGGGCCAAGCTCTTCCTAGGATGCAGCGACGGATCTCTCCGAATCTACGGTCCAGAATCCTTCAGCTTCGACAGATCGCCGCCCTCCGATCCCAATGCCTTAGAGCTGCGAAAGGAACCATATGTACTAGAGAGAACCGTGACTGGGTTCTCGAAGAAGCCCTTGGTGGCAATGGAAGTCTCGGGTACGAGAGACCTTCTTTTGTCGCTCTCGGAATCGATCGCATTTCACCGGCTTCCCAATTTAGAGACAATTGCCGTGATCACCAAGGCAAAAGGCGCTAATGTGTATTCGTGGGACGATCGGAGAGGGTTCTTGTCCTTTGCCAGGCAAAAGAGAGTCTGTATTTTCAGGCACGATGGGGGCCGGGGATTTGTGGAGGTTAAAGAATTTGGTGTTCCAGATTTTGTGAAGTCAATGTCTTGGTGTGGTGAAAATATATGTTTGGGGATTAGAAGAGAATATATGATATTGAATGCCACAAACGGTGCATTGTCTGAGATATTTCCTTCTGGGAGGATTGCCCCACCTTTAGTGGTCTCCCTTCCTTCTGGAGAACTTCTTCTTGGGAAGGACAACATTGGGGTTTTTGTGGACCAAAATGGGAAGCTTCTTCAAGAGGGCAGGATTTGTTGGTCTGAGGCCCCTAAAGTTGTTGTCATTCAGAAGCCATATGCAATAGCTCTCTTACAGAGACATGTTGAGATACGGTCCCTCCGAGTTCCATATCCATTGATACAAACTGTGGTTCTCCGCAATATGTGTCATCTTCACCAGAGTAACAATGCCATACTTGTTGCAGTAGACAACTCTGTTTATGGGCTATTCCCTGTTCCTCTAGGAGCACAGATTGTACAACTAACAGCGTCTGGTGATTTTGAGGAAGCTTTGGCTTTGTGTAAAATGCTTCCACCAGAAGATGCAAGCCTCCGAGCTGCAAAGGAGGGGTCAATTCATATAAGGTATGCACACTATCTGTTTGAAAATGGGAGCTATGAAGAGGCCATGGATCAGTTTTTGGCATCTCAAGTAGATATCACCTATGTGCTTTCTTTGTATCCATCCATTGTTCTTCCCAAATCAGTTGTGCTTCCTGAGCCTGAGAAGCTGATGGAGAATGTTTGGGATGCTTCACATCTCTCAAGAGGTTCATCTGGTGTCTCAGATGATATGGAATCCTCACCTCCTCCACAGCTATTGGAATCTGAAGAAAATGCAGTACTTGAGTCAAAGAAAATGAGCCACAACACTCTCATGGCTCTTATCAAGTTCTTGCAAAAGAAGAGATACAATATAATTGAGAAAGCCACTGCTGAGAGAACGGAGGAGGTTGTTTTAGATGCTGTTGGAGATAATTTTGCATCTTATGATTCAACTAGGTCTAAAAAATCAAACAAGGGGCGTGTTAACATTGCCATCAGCTCAGGTGCTAGGGAGACAGCAGCAATACTAGATACAGCACTACTCCAAGCCCTGCTTCTTACTGGACAGTCTTCAGCTGCTTTGGAATTACTGAAAAGTCTTAACTATTGCGATATGAAAATATGTGAAGAGATTCTTCAGAAAAGAAATCATCACACTGCTCTGTTAGAACTTTACAAGTGCAATGGAATGCATCATGATGCTCTCAAACTTTTGCATCAATTGGTAGAAGATTCAAAGTCAGACCAACCACAAGCTGAACTAAGCCAAAAATTCAAGCCTGAAATGATAATTGAATATCTCAAGCCTCTGTGTGCAACCGAACCTATGCTTGTCTTGGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCACAAACTATTGATCTCTTTTTGTCTGGAAATATTCCGGCGGACTTGGTCAACTCTTACTTAAAACAGCATGCTCCAAACATGCAAGCCATGTACTTAGAGCTTATGCTTGCCATGAATGAACATGGGATCTCTGGAAATCTGCAGAATGAGATGGTGCAAATCTATCTATCGGAAGTACTTGAATGGCATGCAGATTTATCTGCTCAGGGGAAATGGGACGAGAAAGCTTATTCCCCTACAAGGAAGAAATTATTGTCTGCTTTGGAAAGTATCTCAGGTTATAACCCTGAGGGTTTGTTGAAGCGTCTTCCCCCAGATGCTTTATATGAAGAGCGTGCAATTTTGCTGGGCAAAATGAACCTGCATGAGTTTGCCTTATCTCTGTATGTCCATAAGCTTCATGTTCCTGAACTGGCACTGTCCTATTGTGATCGTGTATATGAGTCCGTACTTCATCAAACTTCAGGAAAAACTTCTGGCAATATATACCTCACTCTTTTGCAAATCTATTTGAACCCTCGAAGGACAACAAAGAACTTTGAAAAGAGAATTACTAGTCTAGTATCATCTCAGAATACAAGCATTCCGAAGGTCAGTTCAGGAACATCAGTTAAAGCTAAAGGAGGTCGCTTGGGTAAGAAAATTGCTGAGATTGAGGGTGCAGAAGACATGCGAGTTAGTCTCAGCAGCACTGATAGCGGGAGGAGTGATGGTGATGCAGATGAACCTAGTGAGGAAGGAGGTTCTAGCATCATGCTTGATGAGGTCCTTGATCTGTTGAGCCGAAGGTGGGATAGAATCCATGGAGCACAGGCCCTCAAACTCTTACCGAGGGAAACTAAATTGCAGAACTTGCTTCCATTTCTTGGGCCCCTCCTGAGGAAATCCAGTGAAGCATACAGGAATCTATCAGTGATCAAGAGTCTTAGACAGAGTGAGAATTTGCAGGTAAAGGATGAACTCCACAACCAGAGGAAAACGGTTGTGAGGATCAGCAGTGACAGTATGTGCTCTCTCTGCAACAAGAAGATAGGGACAAGTGTTTTCGCTGTCTACCCCAATGGGAAGACACTGGTGCATTTCGTTTGCTTTAGAGACTCACAGAGTATGAAGGCTGTGGTTAAAAGCTCTCCACTGAGAAAGCGTTAA 3021 0.4406 MVHSAYDSFELLNNCPTRIETIESYGAKLFLGCSDGSLRIYGPESFSFDRSPPSDPNALELRKEPYVLERTVTGFSKKPLVAMEVSGTRDLLLSLSESIAFHRLPNLETIAVITKAKGANVYSWDDRRGFLSFARQKRVCIFRHDGGRGFVEVKEFGVPDFVKSMSWCGENICLGIRREYMILNATNGALSEIFPSGRIAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRICWSEAPKVVVIQKPYAIALLQRHVEIRSLRVPYPLIQTVVLRNMCHLHQSNNAILVAVDNSVYGLFPVPLGAQIVQLTASGDFEEALALCKMLPPEDASLRAAKEGSIHIRYAHYLFENGSYEEAMDQFLASQVDITYVLSLYPSIVLPKSVVLPEPEKLMENVWDASHLSRGSSGVSDDMESSPPPQLLESEENAVLESKKMSHNTLMALIKFLQKKRYNIIEKATAERTEEVVLDAVGDNFASYDSTRSKKSNKGRVNIAISSGARETAAILDTALLQALLLTGQSSAALELLKSLNYCDMKICEEILQKRNHHTALLELYKCNGMHHDALKLLHQLVEDSKSDQPQAELSQKFKPEMIIEYLKPLCATEPMLVLEFSMLVLESCPSQTIDLFLSGNIPADLVNSYLKQHAPNMQAMYLELMLAMNEHGISGNLQNEMVQIYLSEVLEWHADLSAQGKWDEKAYSPTRKKLLSALESISGYNPEGLLKRLPPDALYEERAILLGKMNLHEFALSLYVHKLHVPELALSYCDRVYESVLHQTSGKTSGNIYLTLLQIYLNPRRTTKNFEKRITSLVSSQNTSIPKVSSGTSVKAKGGRLGKKIAEIEGAEDMRVSLSSTDSGRSDGDADEPSEEGGSSIMLDEVLDLLSRRWDRIHGAQALKLLPRETKLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELHNQRKTVVRISSDSMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVVKSSPLRKR* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1133 1006 ProSiteProfiles Citron homology (CNH) domain profile. 16 289 IPR001180 -
Vvi4g1133 1006 Pfam Region in Clathrin and VPS 639 769 IPR000547 GO:0006886|GO:0016192
Vvi4g1133 1006 MobiDBLite consensus disorder prediction 849 872 - -
Vvi4g1133 1006 Pfam Vacuolar sorting protein 39 domain 2 881 989 IPR019453 -
Vvi4g1133 1006 MobiDBLite consensus disorder prediction 405 425 - -
Vvi4g1133 1006 PANTHER CNH DOMAIN CONTAINING 1 994 IPR032914 GO:0016192
Vvi4g1133 1006 Pfam CNH domain 75 280 IPR001180 -
Vvi4g1133 1006 Pfam Vacuolar sorting protein 39 domain 1 509 619 IPR019452 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1133 K20183 - vvi:100265014 1939.47