Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1131 ATGTTTCGCAGAAGGCAATCTCATAATCACGAGGAGAACGATTCTTTGCAACGAGGTGCAAAGGTGAGTGAACTCAGGGCTGCTCTTGGGCCTCTATCTGGGCGTAGTTTACAGTACTGCACTGATGCATGCCTTGTGAGATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAGAATAGTATTCTTAACTTACGGGAGGGTCAAGAACAAATGTCATGGTTGATAGACTTTACAGGATGGTCATTGAACACTAACGTTCCTATCAAGACAGCCCGAGATATCATCAACATTTTACAGAACCACTACCCTGAGAGACTTGCAATATGCATCCTCTATAATCCTCCCAGAATTTTTGTGGCATTTTGGAAGGTTGTCAAGTACTTCCTCGATCCAAAAACATTTCAGAAGGTGAAATTTGTTTACCCAAAGAATAAAGAGAGTCTGGAGGTAATGAAGTCACTTTTTGACGTGGAGAACCTTCCAGGTGAGTTTGGAGGAAAAGCCACACTGAAATATGACCACGAAGAGTTCTCGAGGATGATGGCAGAGGATGATGTGAAAACTGCCAGTTACTGGGGACTTGATAGCAAGCCCTGCCATGTTACTAATGGGTATTCAGGAGCAGAAACAATGCCCCTTGCACCTCCAGCTAGCTAA 873 0.4444 MFRRRQSHNHEENDSLQRGAKVSELRAALGPLSGRSLQYCTDACLVRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWHEVAHEGETGKVSRADFHDRLGRTVLIMRPGMQNTTSAENNIRHLVYLIENSILNLREGQEQMSWLIDFTGWSLNTNVPIKTARDIINILQNHYPERLAICILYNPPRIFVAFWKVVKYFLDPKTFQKVKFVYPKNKESLEVMKSLFDVENLPGEFGGKATLKYDHEEFSRMMAEDDVKTASYWGLDSKPCHVTNGYSGAETMPLAPPAS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1131 290 FunFam Phosphatidylinositol transfer protein 3 1 273 - -
Vvi4g1131 290 Pfam CRAL/TRIO domain 98 238 IPR001251 -
Vvi4g1131 290 PANTHER GH16843P 8 269 - -
Vvi4g1131 290 SMART sec14_4 86 241 IPR001251 -
Vvi4g1131 290 SUPERFAMILY CRAL/TRIO domain 80 258 IPR036865 -
Vvi4g1131 290 SMART CRAL_TRIO_N_2 41 66 IPR011074 -
Vvi4g1131 290 Gene3D - 3 267 IPR036865 -
Vvi4g1131 290 SUPERFAMILY CRAL/TRIO N-terminal domain 9 82 IPR036273 -
Vvi4g1131 290 CDD SEC14 98 239 IPR001251 -
Vvi4g1131 290 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 99 244 IPR001251 -
Vvi4g1131 290 Pfam CRAL/TRIO, N-terminal domain 40 65 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1131 Vvi-Chr4 18297658 18300765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1131 45 233 Acyl Lipid Metabolism Gene Families AT1G55840 28.365 8.58e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1131 - - vvi:100244435 600.897