Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1123 ATGTGGCGGTGCGTTTCTCGTGGCCTTCGCTTCCGTTCTTCGGATTCGAAGCGATCCCTCACCAGCGAATATCTGAAACCTCACATTTCCAGATTCTTCTCTACTGAATCGACTGGGGGAGGATCCTCAGGCACTAGCGAGGCAGAGATTAAAGCTGCCATAGGAGAACTATCTAAACATGGGGTTGATACTGCTGGCATTACCGAGCTTTACCGATCCTCATACACCTCTTCATATACTATTGTCGATCATACATATGATGCAGTTGTTGTAGGAGCTGGTGGGGCAGGGCTTAGAGCTGCCATAGGACTATCTGAGCATGGGTTCAACACTGCTTGCATTACAAAGCTTTTCCCAACTCGGTCACACACAGTTGCAGCTCAGGGTGGTATAAATGCTGCATTAGGAAACATGACCGAAGATGACTGGAGATGGCACATGTATGACACTGTCAAGGGAAGTGACTGGTTAGGTGACCAGGATGCTATTCAGTACATGTGTAGGGAGGCACCAAAAGCAGTGATAGAGCTTGAGAACTATGGTTTACCCTTTTCTCGAACTGAAGATGGGAGAATATATCAACGTGCATTTGGTGGTCAAAGCCTGAACTTTGGAAAAGGTGGACAGGCATATCGTTGTGCATGTGCTGCCGATCGAACTGGGCATGCTTTGTTGCATACTCTATATGGCCAGGCTATGAAACATAATACACAATTTTTTGTAGAGTACTTTGCATTGGATCTTTTAATGGATAATGATGGTGCATGCCAAGGTGTAATTGCATTAAATATGGAGGATGGGACATTACATAGGTTCCAAGCTGCTTCAACAATTCTAGCCACAGGGGGCTATGGTAGAACATACTTCTCTGCAACCTCGGCCCATACATGCACTGGTGATGGTAATGCCATGGTTGCACGTGCCGGGCTCCCTCTTCAGGATCTCGAATTTGTGCAGTTTCACCCAACAGGTATATATGGTGCTGGGTGCCTTATTACTGAAGGATCCCGTGGTGAAGGTGGTATCCTGAGGAATAGTGAAGGTGAACGGTTTATGGAACGATATGCCCCTACAGCGAAGGATCTTGCATCAAGAGATGTTGTTTCAAGATCTATGACAATGGAAATCCGAGAAGGTCGTGGTGTAGGACCTCTGAAAGACCATATCTACCTCCACTTGAACCACTTACCTCCAGAAGTTCTGAAGGAACGGCTTCCTGGTATCTCTGAAACTGCTGCCATTTTTGCTGGAGTAGATGTTACAAAGGAGCCCATCCCTGTTTTACCCACTGTTCACTATAACATGGGAGGAATTCCCACAAATTACCATGGAGAGGTATTAACAATTAAAGGCAATGATCCCGATGCAGTAGTTCCTGGACTAATGGCTGCTGGTGAGGCTGCCTGTGCATCAGTCCATGGTGCCAATCGCCTTGGTGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGGGCTTGTGCAAATAGGGTTGCAGAGATCCATAAACCAGGGGAAAAACAAAAACCGTTGGAAAAGGATTCTGGGGAAAAGACAATTGCATGGCTGGACAAACTAAGGAATTCAAATGGCTCAATTCCGACCTCAAAAATCCGTTTAAATATGCAGCGAGTAATGCAAAATAATGCTGCTGTCTTCCGCACACAAGAAACATTAGAGGAAGGTTGTAAGTTGATTGACAAAGCATGGGAGAGCTTTCATGATGTACAGTTGAAGGATAGGAGTCTGATATGGAACTCTGACTTGTCAGAGACCATAGAGTTGGAAAATCTTTTGATAAACGCATGTATCACCATGCATTCTGCCGAGGCCAGGAAAGAGAGCAGAGGAGCGCATGCCCGTGAAGATTTTACGAAAAGAGATGATGAGAACTGGATAAGGCACACTTTGGGATATTGGGAAAATGAGAAGGTTCGGCTAGATTACAGGCCAGTTCACATGAACCCATTGGACGATGAGATTGAGTCGATCCCACCTAAAGCACGCGTATATTGA 2013 0.4555 MWRCVSRGLRFRSSDSKRSLTSEYLKPHISRFFSTESTGGGSSGTSEAEIKAAIGELSKHGVDTAGITELYRSSYTSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMDNDGACQGVIALNMEDGTLHRFQAASTILATGGYGRTYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTIKGNDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGEKQKPLEKDSGEKTIAWLDKLRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDKAWESFHDVQLKDRSLIWNSDLSETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWIRHTLGYWENEKVRLDYRPVHMNPLDDEIESIPPKARVY* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1123 670 NCBIfam succinate dehydrogenase flavoprotein subunit 84 670 IPR011281 GO:0006099|GO:0016627|GO:0050660
Vvi4g1123 670 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 75 292 - -
Vvi4g1123 670 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 529 670 IPR037099 GO:0016491
Vvi4g1123 670 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 429 494 - -
Vvi4g1123 670 Pfam FAD binding domain 87 483 IPR003953 -
Vvi4g1123 670 SUPERFAMILY FAD/NAD(P)-binding domain 76 506 IPR036188 -
Vvi4g1123 670 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 509 625 - -
Vvi4g1123 670 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 622 670 - -
Vvi4g1123 670 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 325 428 - -
Vvi4g1123 670 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 87 670 IPR014006 GO:0016627|GO:0022900|GO:0050660
Vvi4g1123 670 Pfam Fumarate reductase flavoprotein C-term 539 670 IPR015939 GO:0016491
Vvi4g1123 670 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 74 670 IPR030664 -
Vvi4g1123 670 Gene3D - 87 494 IPR036188 -
Vvi4g1123 670 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 315 433 IPR027477 -
Vvi4g1123 670 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 121 130 IPR003952 GO:0016491
Vvi4g1123 670 Gene3D - 510 620 - -
Vvi4g1123 670 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 325 428 IPR027477 -
Vvi4g1123 670 Gene3D succinate dehydrogenase protein domain 621 670 - -
Vvi4g1123 670 PIRSF SDHA_APRA_LASPO 76 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1123 Vvi-Chr4 18184921 18192009 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1123 K00234 - vvi:100254718 1337.4