Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1113 ATGGACGAGATCTGGGAACGGGCCGTAGAAACTGCGCTGAACGGCCAAACAGATCACGCTTCGGTTCGAACCCTAACCCTAGACGGCGCAGTGAAGTGCGTCCACGGTCGACTTCCTCCTCCCAGTCTACTAGAGAAGTTCCAGAACCTCCAGCATCTATCGATCGCAAACATTGGTGTTTCGTCTCTCGAACAGTTTCCGCGTCTCAGAAGCCTTGAGAAACTCATCCTATCCGATAATCGAATAGCCGGAGGCCTTGAATTCCTGGTCGAAGCAGGTCTTGAATCGTTGCGAGACCTTGACCTTTCCAACAATAGAATTCAATTTATTGAAGATCTTGCGCCACTTGCACAGCTCAAGCTCGTTTCCCTTGATCTATATGAGTGTCCAGTTACGCGTGGTAAGGATTATCGATCTAGGGTTTTTGGATTAATAAAATCTCTGAAGTATTTAGATAAGATGGACGCAGAGGAGAATGAGCGGCCAGAGTCCGATGATGAGGAGGATGAGGAAGATGACGAGGAAGATGATCCTGGGAGTGGCGAAATTGACGGTGATGATAGGCCATATAGAATGAACAACGGGCATAGCGTGGAAGGGATAGTCGATGTTGATGAGGATGAAGAGAGTGATGCGGATGAGGAGGAGACAGAGACGGCGAGAGGGGTTAATGGATCAAGTAGGTCTTCTCACCATCAGTCAAACGGTTTTCGGGTTGCTGCAGTGAATGGAGAGGAGGAAGATGAGGATGAGGGCGATGATGAAGAGGACAATGATTCAGGGGAGGAGATTGATGAAGAGGATGGTGAGGATGAAGATGTGATTGAGGTTCATGAGATTGAGGACAGTGATGATGAAGAAGACGGTGTAGAAGATGAAGATGATGAGGATGAGGATGATGATGATGAGGATGAAGAAGAGGAAGTGGATAACGAAGAGGGGGGTTTTACAGAGCCGAGGAGTACAGGGCGGGTGATGAGCGCGGAAGGGGAGATTGATGCCCATGAACAGGGGGAGGAGGACGCAGAGGAGGATGATAATGGAGAAACTGGGGAGGAAGAGCAGGGTGTTGAAGAAGTTGGAGAGTTTGAAGACGAAGAAGAGTGTGAGGAAGAGGAAGAAGATTATGCTTCAGGTTACTTGGTTCAACCTGTGGGCCAGGCTGAAGAGGATGCTGGAGGCAGTGAAATGGAGCCTGGAAACGAGGAAGATGATGCTGAAGAGGAGGAAGAAGTTGAAGATGACATTCAGCTGCTGCATCCCTCATCTCCGAGCCTCAAGAGGAAAAGAGATGAACAAGCCAACAATGATGATGGTGAAGGGGCTGATGAGGATGAGGATGACGTTGTTGATTACACCAAGTCATCAAAGAAGAAGATGTCATTTTTACCTGGTCAACCGTCGTGGGGACCAGCCTTCTCCTGA 1425 0.4884 MDEIWERAVETALNGQTDHASVRTLTLDGAVKCVHGRLPPPSLLEKFQNLQHLSIANIGVSSLEQFPRLRSLEKLILSDNRIAGGLEFLVEAGLESLRDLDLSNNRIQFIEDLAPLAQLKLVSLDLYECPVTRGKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEDEEDDEEDDPGSGEIDGDDRPYRMNNGHSVEGIVDVDEDEESDADEEETETARGVNGSSRSSHHQSNGFRVAAVNGEEEDEDEGDDEEDNDSGEEIDEEDGEDEDVIEVHEIEDSDDEEDGVEDEDDEDEDDDDEDEEEEVDNEEGGFTEPRSTGRVMSAEGEIDAHEQGEEDAEEDDNGETGEEEQGVEEVGEFEDEEECEEEEEDYASGYLVQPVGQAEEDAGGSEMEPGNEEDDAEEEEEVEDDIQLLHPSSPSLKRKRDEQANNDDGEGADEDEDDVVDYTKSSKKKMSFLPGQPSWGPAFS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1113 474 MobiDBLite consensus disorder prediction 334 377 - -
Vvi4g1113 474 MobiDBLite consensus disorder prediction 202 216 - -
Vvi4g1113 474 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Vvi4g1113 474 MobiDBLite consensus disorder prediction 244 313 - -
Vvi4g1113 474 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 17 437 IPR045081 -
Vvi4g1113 474 MobiDBLite consensus disorder prediction 222 237 - -
Vvi4g1113 474 SUPERFAMILY L domain-like 38 156 - -
Vvi4g1113 474 Gene3D Ribonuclease Inhibitor 5 170 IPR032675 -
Vvi4g1113 474 MobiDBLite consensus disorder prediction 159 182 - -
Vvi4g1113 474 Pfam Leucine-rich repeat 58 164 - -
Vvi4g1113 474 MobiDBLite consensus disorder prediction 395 415 - -
Vvi4g1113 474 FunFam acidic leucine-rich nuclear phosphoprotein 32-related protein-like 5 167 - -
Vvi4g1113 474 Coils Coil 325 345 - -
Vvi4g1113 474 MobiDBLite consensus disorder prediction 155 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1113 Vvi-Chr4 18075293 18079403 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1113 - - vvi:100261569 403.29