Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1112 ATGAGGTGCCCGTACTGCACGGCGGCGCAGGGGCGGTGCGGCACCACGGGGTCAGGGCGATTGGTGACGGAGTGCACCTCCTGTGGACGAGTCATGGAAGAGCGCCAATCCCAAATCCACCACTTATTCCACCTTCGAGCCCAAGATACCCCTCTCTGCCTCGTCACTTCCGACCTCCCACCACCTCCTCCTCAGCAAGCCCAGACCGCCCAGGAACAAGAAGATGATCCTTTCGAGTCCACCGGCTTCATCTCCGCCTTCTCCACCTGGTCCCTCGACCCATGCCCAATCTTCGCCCGCTCGTGCCTTTCCTTCTCAGGCCACCTTGCTGAACTCGAGCGTGTTCTCGAATCATCATCATCGTCATCATCGTCATCTTCTTCTTCTGCTGCTGCGGCAGCGTCGTCTTCGTCTCTGGCCTCCTCTGGACCTGCGGTTGTGGTCGATAATCTTAGGGCTTATCTGCAGATCATAGACGTGGCCTCCATTTTGGGGTTGGACTATGATATAGCGGACCACGCATTTGAGCTATTCAGGGACTGTTCTTCGGCTACCTGTTTGAGGAATCGCAGTGTGGAGGCTCTTGCCACTGCTGCTCTTGTTCAGGCCATTAGGGAGGCCCAGGAGCCCAGAACTCTTCAGGAAATCTCAATTGCAGCCAATGTACCCCAGAAGGAGATAGGGAAGTACATCAAGATACTGGGAGAAGCTCTACAACTAAGCCAGCCCATTAATAGTAATTCCATATCAGTCCATATGCCAAGATTTTGTACGCTTCTACAGCTCAACAAATCTGCTCAGGAACTGGCGACACACATTGGAGAAGTTGTGATCAACAAATGCTTCTGTACTCGAAGGAACCCCATTAGCATTTCTGCAGCAGCTATATACTTGGCCTGCCAACTAGAAGACAAGCGCAAGACCCAGGCCGAGATTTGTAAGGTGACGGGTCTAACTGAGGTCACTCTTCGAAAAGTTTACAAGGAGCTATTAGAGAATTGGGACGATCTTCTCCCTTCCAATTATACTCCAGCTGTCCCTCCAGAGAAAGCATTTCCCACAACTGCAATTACCTCTGGCCGTTCTTCAGCACCTAGAGTTGATCTTATAGAAATTGTTTCTTGTCTGGACAGGGATAAGCAGCCCGAAAGCAAACCAAGTAAACCGAACGAGACCTTGGAAACTTCCCACCAGGCCAGAGGCAAAGAGGATACTGAATGTAAAGGGAACTGTCAAGGAGCCCATACACTTGGTTTGAACCGGCCAACAACTTTCTGGCAGCTCCCAAACCCATTTGGGGGTTCTGGTTTTAGGACATCAGGGGAGAAGAATCAAATTGTGAGTGGAGGAATGGACTTGAACGAGGGTGGGGCTAATCCTCAAGAGTTGGAGCAGAAGTTAGACAATGGCGCAAAGGCTGCAACTGTTTCTGTGAGGGCTGAGCAGTTTCCTGGTGCCCCGCCTTCAAGTGGGAGTTCCATAACGTGGCCATTTCGGCAACCACCTTCATCAGGATCTTCTTCTTCATATGCTCAACTTATGCAATCATTGAAGGTAGCATCAGGTTTTCCAGAGCTTAAAGGATCTGGAAGGAAAGGTGGTGGGCAATGTGAGGATCCCTAG 1623 0.5114 MRCPYCTAAQGRCGTTGSGRLVTECTSCGRVMEERQSQIHHLFHLRAQDTPLCLVTSDLPPPPPQQAQTAQEQEDDPFESTGFISAFSTWSLDPCPIFARSCLSFSGHLAELERVLESSSSSSSSSSSSAAAAASSSSLASSGPAVVVDNLRAYLQIIDVASILGLDYDIADHAFELFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTAITSGRSSAPRVDLIEIVSCLDRDKQPESKPSKPNETLETSHQARGKEDTECKGNCQGAHTLGLNRPTTFWQLPNPFGGSGFRTSGEKNQIVSGGMDLNEGGANPQELEQKLDNGAKAATVSVRAEQFPGAPPSSGSSITWPFRQPPSSGSSSSYAQLMQSLKVASGFPELKGSGRKGGGQCEDP* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1112 540 MobiDBLite consensus disorder prediction 486 511 - -
Vvi4g1112 540 SUPERFAMILY Cyclin-like 152 242 IPR036915 -
Vvi4g1112 540 SUPERFAMILY Cyclin-like 249 348 IPR036915 -
Vvi4g1112 540 Gene3D - 151 242 - -
Vvi4g1112 540 MobiDBLite consensus disorder prediction 481 511 - -
Vvi4g1112 540 Gene3D - 251 348 - -
Vvi4g1112 540 MobiDBLite consensus disorder prediction 428 447 - -
Vvi4g1112 540 FunFam Transcription initiation factor TFIIB 151 242 - -
Vvi4g1112 540 Pfam Transcription factor TFIIB repeat 251 332 IPR013150 GO:0017025
Vvi4g1112 540 Pfam Transcription factor TFIIB repeat 153 234 IPR013150 GO:0017025
Vvi4g1112 540 MobiDBLite consensus disorder prediction 378 407 - -
Vvi4g1112 540 SMART cyclin_7 251 332 IPR013763 -
Vvi4g1112 540 SMART cyclin_7 155 236 IPR013763 -
Vvi4g1112 540 MobiDBLite consensus disorder prediction 428 461 - -
Vvi4g1112 540 CDD CYCLIN_TFIIB_archaea_like_rpt2 248 334 - -
Vvi4g1112 540 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Vvi4g1112 540 PRINTS Transcription initiation factor IIB signature 286 302 IPR000812 GO:0006352|GO:0070897
Vvi4g1112 540 PRINTS Transcription initiation factor IIB signature 318 332 IPR000812 GO:0006352|GO:0070897
Vvi4g1112 540 PRINTS Transcription initiation factor IIB signature 197 216 IPR000812 GO:0006352|GO:0070897
Vvi4g1112 540 PRINTS Transcription initiation factor IIB signature 223 238 IPR000812 GO:0006352|GO:0070897
Vvi4g1112 540 PRINTS Transcription initiation factor IIB signature 252 270 IPR000812 GO:0006352|GO:0070897
Vvi4g1112 540 FunFam Transcription initiation factor IIB 251 348 - -
Vvi4g1112 540 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 349 IPR000812 GO:0006352|GO:0070897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1112 K03124 - vvi:100256546 1003.43