Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1109 ATGGATTCAAAGGAGGAGGGGAAGAATCAAACAGGGATCAACAAGTATGCCTGCGCTTGTGCCGCAGTTGCTTCTATGATCTCCATTATATTTGGTTATGACACTGGTGTTATGAGTGGAGCCATGCTATTCATAAAAGAAGATCTCAAAGTCAATGATACCCAAGTGTCAGTCCTGGCGGGAATCCTAAACGTGTGCGCGCTGGTGGGTTCCCTTGCTGCGGGAAGAACATCAGATTTCTTAGGCCGTCGATACACAATTGTCCTAGCCTCCATCATCTTCTTGGTTGGTTCAGTTCTGATGGGCTATGCTCCTAATTACGCAGTTCTATTGACTGGAAGATGCACTGCTGGGATCGGCGTGGGCTATGCGCTCATGATTGCACCTGTTTACTCCGCCGAGATTTCATCTCCTAAGTCTAGGGGCTTTTTGACCTCTCTCCCAGAGCTTGGCATCAGTACAGGAATATTATCCGGCTACCTCGCAAACTACTTTATGGCTGAATTGCCTCTAAAACTAGGCTGGAGGTTGATGCTCGGTATTGCGGCAGTCCCATCACTTGGCTTGGCTATTGGTATTCTTAAGATGCCTGAGTCCCCTCGGTGGTTAGTGATGCAAGGCCGACTCGGAGACGCCGAGAAAATCTTGTTGCGAGTATCTAATACTAGAGAAGAAGCTGAAACTCGGTACCGGGACATAAAGATTGCTGCAGGAATTGACGAAGACTGCAACGAGGATGTTGTCAAGCCTCCAAGTAACACTCACGGTGGAGGGGTGTGGAAAGAGCTATTACTAAGGCCCACCCCTGCCGTCCGTTGGATGTTACTGGCCACGATTGGAATCCATTTCTTTGAGCACGCCACTGGAATAGAAGCTGTCATGTTATTCAGTCCAAGAATCCTGAAGAAAGCTGGAGTCACCAGTAAGGACAAGCTATTGCTTGCCACTGTTGGGGTGGGGATCACAAAGCTGACATTTATGGCACTGTCCACACTCTTAATTGACAGAGTAGGGAGGAGGCCTCTCCTGCTAACAAGCACAACGGGTATGATTGTAGCCCTAACTGGATTAGGGTTTGGTTTAACCATGGTGGAGCACGCTAAAGAGAGGCTCTTTTGGGCACTTAACCTTAGTTTAGTTGCTACCTACACCTTTGTGGCTTTCTTCAACATTGGGGTTGCGCCTGTCACTTGGGTCTATCCGGCAGAGATATTTCCTCTCAAGTTAAGGGCACAAGGAGCTAGTATTGGGGTGGCAGTGAATCGGGGCACCAATGCTGCTATTTCAATAAGCTTCATTCCCATCTACAAGGCCATGACCATAGGTGGCGCTTTCTTCATGTTTGCTGGCATATCCGTAGTGGCTTGGATCTTCTTCTATTTCCTCTTGCCTGAGACCAAGGGGAAGCCCTTGGAAGAAATGGAGATGCTCTTTACCAGGGGGGGTAGATCTAAATCTAAAAATGCAGGTATTGAAGCTCAGCCAGTAGGATGA 1494 0.4819 MDSKEEGKNQTGINKYACACAAVASMISIIFGYDTGVMSGAMLFIKEDLKVNDTQVSVLAGILNVCALVGSLAAGRTSDFLGRRYTIVLASIIFLVGSVLMGYAPNYAVLLTGRCTAGIGVGYALMIAPVYSAEISSPKSRGFLTSLPELGISTGILSGYLANYFMAELPLKLGWRLMLGIAAVPSLGLAIGILKMPESPRWLVMQGRLGDAEKILLRVSNTREEAETRYRDIKIAAGIDEDCNEDVVKPPSNTHGGGVWKELLLRPTPAVRWMLLATIGIHFFEHATGIEAVMLFSPRILKKAGVTSKDKLLLATVGVGITKLTFMALSTLLIDRVGRRPLLLTSTTGMIVALTGLGFGLTMVEHAKERLFWALNLSLVATYTFVAFFNIGVAPVTWVYPAEIFPLKLRAQGASIGVAVNRGTNAAISISFIPIYKAMTIGGAFFMFAGISVVAWIFFYFLLPETKGKPLEEMEMLFTRGGRSKSKNAGIEAQPVG* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1109 497 Gene3D MFS general substrate transporter like domains 9 481 IPR036259 -
Vvi4g1109 497 Pfam Sugar (and other) transporter 21 478 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 SUPERFAMILY MFS general substrate transporter 14 475 IPR036259 -
Vvi4g1109 497 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 8 481 IPR045262 GO:0015144
Vvi4g1109 497 ProSiteProfiles Major facilitator superfamily (MFS) profile. 20 467 IPR020846 GO:0022857
Vvi4g1109 497 PRINTS Sugar transporter signature 28 38 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 PRINTS Sugar transporter signature 111 130 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 PRINTS Sugar transporter signature 402 414 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 PRINTS Sugar transporter signature 285 295 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 PRINTS Sugar transporter signature 379 400 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 FunFam probable polyol transporter 4 10 481 - -
Vvi4g1109 497 NCBIfam sugar porter family MFS transporter 15 474 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi4g1109 497 ProSitePatterns Sugar transport proteins signature 1. 74 91 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1109 Vvi-Chr4 18045345 18047078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1109 1 482 Organic Solute Cotransporters AT4G36670 67.702 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1109 - - vvi:100256475 972.23