Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1105 ATGTCATGTTCTCTTGCCCGCCACCTCCGCCACGTCCGTCACCTCTCAACTGCCGCCGCCGCCGCCGCCTCCACCGCTGCTGCCTCTGCCTCTTCCTCGTCCATATCCGTTTCCAGAGCTAAATCGATACTCCGATCAGAATTTGATCCAGACAGAGCCTTAGAAATCTACTCCTCCGTTTCCAAACACTACACCTCCCCACTCGCCTCTCGCTACGCCCAAGACCTCACCGTTAAACGCCTTGCCAAGTCTCGCCGCTTCGCCGATATCGAGACCCTGATCGAGTCCCACAAGAATGATCCCAAAATCACCCAAGAACCTTACCTTTCCACCTTGATTCGATCCTATGGTATAGCCGGCATGTTCCAACATGCCCTCAGAACGTTTAATCAAATGGAAGAGCTTGGCACTCCTCGATCATCCATTTCCTTCAACGCCCTTTTGTCCGCCTGTAATCAATCCAAGTTGTTCGATCAAGTACCCAAATTCTTCGAAGAAATTCCCAGAAGGTACGGTGTTTTGCCAGATAAGATTTCTTATGGTATATTGGTGAAATCATACTGTGAATCGGGTTTGTCTGACAAAGCAATTTCGATGTTGAAAGAAATGGAAGAGAAGGGTGTTGAGATTACAGCAGTTACGTTCACGACGATATTGGATGCTTTGTACAAGCAGGGGCAGAGTGATAGAGCTGAGAAAGTTTGGCATGAAATGGCGAAAAAGGGGTGTTTGGATGTTGGGGCCTATAATGTGAAGATTATGTTTGCCCATGGCGGAGACCCCGAAAATGTGAAGGCGTTGATCGATGAGATGAGCAATGCTGGGTTGAAACCGGACACCATCAGTTACAATTATTTGATGACCAGTTATTGCAAGAGCGGGATGGTGGATGAGGCAAAGAAGGTTTATGCAGAGTTAGAGGAAACTGGGTGTCATCCCAATGCAGCCACATTTAGGACTTTGATTTATTATTTATGTCGAAGTGGAGACTTTGAAACGGGGTATAAGGTTTTTAAGCAGAGTGCTTTTAGGCGTAAGATACCAGATTTTGGTACATTGAGGCATTTGGTGGAAGGATTGGTGCAGAAAAAGAAAACCAAGGAGGCCAAAGGATTGATCAGAACGGTGAAAAAGAATTTTCCTGCAAATTTCTTGAATGTGTGGAGGAAGCTGGAGGAGGATCTTGGTTTAGCTGGCGTAGATTCTTCTCCGGCTGCTGATGATGTCCAAGAGGCTACTTCATAG 1245 0.4675 MSCSLARHLRHVRHLSTAAAAAASTAAASASSSSISVSRAKSILRSEFDPDRALEIYSSVSKHYTSPLASRYAQDLTVKRLAKSRRFADIETLIESHKNDPKITQEPYLSTLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLSACNQSKLFDQVPKFFEEIPRRYGVLPDKISYGILVKSYCESGLSDKAISMLKEMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGCLDVGAYNVKIMFAHGGDPENVKALIDEMSNAGLKPDTISYNYLMTSYCKSGMVDEAKKVYAELEETGCHPNAATFRTLIYYLCRSGDFETGYKVFKQSAFRRKIPDFGTLRHLVEGLVQKKKTKEAKGLIRTVKKNFPANFLNVWRKLEEDLGLAGVDSSPAADDVQEATS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1105 414 Pfam PPR repeat family 175 224 IPR002885 -
Vvi4g1105 414 Pfam PPR repeat family 278 327 IPR002885 -
Vvi4g1105 414 Pfam PPR repeat 110 136 IPR002885 -
Vvi4g1105 414 Pfam PPR repeat 142 170 IPR002885 -
Vvi4g1105 414 NCBIfam pentatricopeptide repeat 110 137 IPR002885 -
Vvi4g1105 414 NCBIfam pentatricopeptide repeat 317 340 IPR002885 -
Vvi4g1105 414 NCBIfam pentatricopeptide repeat 281 315 IPR002885 -
Vvi4g1105 414 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Vvi4g1105 414 NCBIfam pentatricopeptide repeat 213 243 IPR002885 -
Vvi4g1105 414 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 29 404 - -
Vvi4g1105 414 Gene3D Tetratricopeptide repeat domain 244 393 IPR011990 GO:0005515
Vvi4g1105 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vvi4g1105 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vvi4g1105 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vvi4g1105 414 SUPERFAMILY HCP-like 220 384 - -
Vvi4g1105 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vvi4g1105 414 Gene3D Tetratricopeptide repeat domain 7 169 IPR011990 GO:0005515
Vvi4g1105 414 Gene3D Tetratricopeptide repeat domain 170 243 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1105 Vvi-Chr4 18009481 18010725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1105 111 378 Miscellaneous Gene Families AT4G11690 26.259 6.98e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1105 - - vvi:100246188 789.26