Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1097 ATGCCATCTGGTGTTTTCCCAAATCTGAACATCGCTTTCTCATCTGGCATCCGGAGAGCGATAACTGCACAAAGAGGTGGGCTCCACAGTTCAATTGAATTGCAGCTTGGGTGGAGTAAATTGTTGACTGGAAATACCGGCTTGTGCCTTTCCTCTCCATTTTCAACTACAGTGCTTTCCTCAAGACCAGATTGTTACTTTGTTAATCAGAAAAGAGGCCTGGCAGTTGGGGTACCTGTTTCCCGATCCCTTTCTCTGCACTCAATGCCAAGTCCATCTTCTCAGCTTTTTGAATATCAAATTAATAGCTTGATATCTGACATCGGTCGATTTTCAAAAAGCAATCTGTATCTTAAAAAATCTATGGCTGCTTCTGGTTCCAAGGCTGTCTCAGGAGATATTTACATTGATGAAATAACTGCAACTGGGAATCTCTCAAACTTTGCAAAACCTACTGGTGTGTTTTTCAATGATAGAAGTCTTAGCAGTTGTCGAAAAGCTAGCATGAGTTTAAGAAATCAAGAACCACCCAACCGTAGTCTGGTTTGTGGGTATCTAATATTTGATGTAACGCGGAGGAATTGCATCTCTAATCCACTTGATGGACCATGGTTTAAAAACTTCCATACATGGTCTTCTTCATGTTACTCTGCTGGAGCTGCTCCAGATGTATCTTTTGGTGGATCTTCGAGTGATGAACAGCTTTCAAAGTCTGCAGCGTCATCTGACCAAGCTATTCTAGGTCACAGAACCTTGAAGCTAATTTCAGGATCATGTTACCTGCCACACCCTGATAAGGAAGAAACAGGTGGAGAAGATGCTCATTTTATTTGCATAGATGAACAAGCTATTGGTGTGGCAGATGGTGTTGGTGGCTGGGCAGATGTTGGTGTTGATGCAGGAGAATATGCCCGAGAACTTATGTCTAATTCAGTAACTGCAATTCAGGAAGAGCCAAAGGGTTCGATTGACCCATCTAGGGTGTTAGAGAAGGCCCACTCAAGCACAAAAGCGAAAGGATCTTCAACAGCTTGCATTGTAGCCCTCACAGACCAGCAGGGACTCCAAGCCATTAATCTAGGGGACAGTGGATTTATAGTGGTTCGAGATGGATGCACAATTTTTCAATCCCCTGTGCAGCAGCATGGGTTCAATTTCACATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATGGATTGTTTGACAACTTGTATAACAGTGAAGTTACTGCTGTTGTTGTTCATGCGGTGAGAGCTGGATTGGGACCCCAAGTAACAGCTCAGAAGATAGCAGCTTTGGCACGACAGCGAGCACAGGACAGGATGCGGCAGACACCATTCTCTACTGCTGCTCAAGATGCCGGGTTCCGTTATTATGGGGGCAAGCTTGATGACATAACTGTAGTTGTGTCTTTTATAACTAGCACATCCAATGGATGA 1506 0.4456 MPSGVFPNLNIAFSSGIRRAITAQRGGLHSSIELQLGWSKLLTGNTGLCLSSPFSTTVLSSRPDCYFVNQKRGLAVGVPVSRSLSLHSMPSPSSQLFEYQINSLISDIGRFSKSNLYLKKSMAASGSKAVSGDIYIDEITATGNLSNFAKPTGVFFNDRSLSSCRKASMSLRNQEPPNRSLVCGYLIFDVTRRNCISNPLDGPWFKNFHTWSSSCYSAGAAPDVSFGGSSSDEQLSKSAASSDQAILGHRTLKLISGSCYLPHPDKEETGGEDAHFICIDEQAIGVADGVGGWADVGVDAGEYARELMSNSVTAIQEEPKGSIDPSRVLEKAHSSTKAKGSSTACIVALTDQQGLQAINLGDSGFIVVRDGCTIFQSPVQQHGFNFTYQLESGRAGDLPSSGQVFTIPVAPGDVIVAGTDGLFDNLYNSEVTAVVVHAVRAGLGPQVTAQKIAALARQRAQDRMRQTPFSTAAQDAGFRYYGGKLDDITVVVSFITSTSNG* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1097 501 ProSiteProfiles PPM-type phosphatase domain profile. 255 495 IPR001932 -
Vvi4g1097 501 FunFam 5-azacytidine resistance protein azr1 263 389 - -
Vvi4g1097 501 Pfam Stage II sporulation protein E (SpoIIE) 283 492 IPR001932 -
Vvi4g1097 501 Gene3D - 265 391 IPR036457 -
Vvi4g1097 501 PANTHER PROTEIN PHOSPHATASE 2C 231 498 IPR039123 -
Vvi4g1097 501 SUPERFAMILY PP2C-like 259 493 IPR036457 -
Vvi4g1097 501 Gene3D - 398 500 IPR036457 -
Vvi4g1097 501 SMART PP2C_4 249 493 IPR001932 -
Vvi4g1097 501 SMART PP2C_SIG_2 254 495 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1097 Vvi-Chr4 17890807 17903742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1097 K17508 - vvi:100261557 961.829