Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1085 ATGATTAAGCTTTTTAAAGTAAAGGAGAGACAGAGAGAAATTGCTGAGAGTGCCAATGGAAGGGCACCCGTTAAGAAGCAAACTGCTGGAGAATTGCGCCTTCATAAAGAAGGTTCTTGGGGTATGTATCTTGCAGATATCAGTGAGTTGAACCTACCCAAATCATGTTCCATATTATTCCCCAATGGAAAGGATGATCTGATGAACTTTGAAGTTGTAATTCGACCTGATGAAGGATATTATTTAGGTGGCACATTTAATTTCTCTTTCCAAGTAAATTCTATCTATCCACATGAAGCTCCAAAAGTCAAGTGCAAGACCAAGGTCTACCATCCCAACATTGACTTGGAAGGAAATGTTTGCCTCAACATTTTACGAGAAGATTGGAAACCTGTCCTTAATATAAATACGATTATTTATGGATTGTACCATCTTTTCACGCAACCGAATCATGAGGATCCCCTCAACCATGAAGCAGCAGCTGTGTTGAGAGATAACCCAAAGTTGTTTGAATCCAATGTAAGAAGGGCTATGGCTGGCGGGTATGTGGGACAGATCTCCTTCCCACGGTGTCTGTAG 579 0.4093 MIKLFKVKERQREIAESANGRAPVKKQTAGELRLHKEGSWGMYLADISELNLPKSCSILFPNGKDDLMNFEVVIRPDEGYYLGGTFNFSFQVNSIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTQPNHEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQISFPRCL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1085 192 Gene3D Ubiquitin Conjugating Enzyme 43 192 IPR016135 -
Vvi4g1085 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 110 125 IPR023313 -
Vvi4g1085 192 SMART ubc_7 32 183 - -
Vvi4g1085 192 FunFam NEDD8-conjugating enzyme Ubc12 25 192 - -
Vvi4g1085 192 Pfam Ubiquitin-conjugating enzyme 56 177 IPR000608 -
Vvi4g1085 192 CDD UBCc 33 176 IPR000608 -
Vvi4g1085 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 66 169 - -
Vvi4g1085 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 183 IPR000608 -
Vvi4g1085 192 SUPERFAMILY UBC-like 46 190 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1085 Vvi-Chr4 17682676 17684679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1085 K10579 - vvi:100259910 372.859