Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1079 ATGGCGAATCTTCCTATGTTCCTCACCCTCATCTCACTTCTACCATTTCTATGCTACTCCTTCTCTCCCGAAAACCCCACGGATCGCCGCATTCTAGTCGTCCTCGATGACATCGGCCTCAAATCTTCCCACTCCATCTTCTTCAAATCTCTCCAAACTCGCGGTTCAGAACTCGACTTCAAGCTTGCAGACGATCCGAAGATTTCTCTTCAAAGATACGGCCAATATTTATATGATGGATTGATTCTATTTTCCCCGACAACCGAGCGGTTTGGAGGGTCATTGGACCTGGGTGCTATTCTCGATTTTGTTGATTCTGGTCATGACTTAATTATAACTACTGATGCATCTGCATCTGGTTTGATCCGGAGTATCGCGACGGAGTGCGGCGTTGATTTTGATGAGGATCCGTCGGCTATGGTTATTGATCACACCAGCTATGCAGTGTCAGACACCGAAGGAGACCATACATTGATTGCTAGTGATGATTTCATTCAGTCCGATGTCATTCTGGGAAGCACCACAATTGAGGCCCCTGTACTTTACAAAGGGATTGGACATTCATTAAATTCTGCCAACAGCCTGGTTTTGAAAGTTCTTTCAGCTTCTCCTTCAGCATATTCTGCTGACCCAAACTCCAAGTTGTCAAGTCCTCCATTGTTGACTGGATTGGCTATTTCATTAGTTTCAGTTGTGCAAGCTAGAAACAATGCTCGGATCATGATCTCTGGTTCTTTAGAAATGTTTAGTAATCGACTGTTCCAGTCTAGTGCTCAGAAAGCTGGGAGCTCAAATAGGTATGAGAAATCAGGTAATGAACAGTTTGTGACTGAACTTAGCAAATGGATTTTCCATGAAAGGGGTCATCTAAAGGCTGCAAATGTCAGGCACCACAAAGTTGGGGAAACAGATGAACCTGCAATGTACAGGATCAATGATGACCTTGAATACTCTGTTGAGATCCATGAATGGTCTGGTAAGAGCTGGGAACCATACGTATCTAATGATGTTCAAATACAGTTCTACATGATGAGCCCCTATGTATTGAAAACCCTGTCAAGTGACCAGAAGGGTAAATACTTTACATCATTCAAAGTGCCCGATGTTTATGGGGTCTTCCAGTTTAAGGTCGAGTATCAGAGACTTGGATACACTAGCTTGTCTCTCTTGAAGCAGATTCCAGTCCGGCCCTTCAAACACAATGAATATGAAAGATTCATAAAAACAGCATTTCCCTATTATGGAGCTTCATTTTCTGCTATGGCAGGGTTCTTCATCTTCACCATTGTCTACCTGTACTACAAGTGA 1308 0.4327 MANLPMFLTLISLLPFLCYSFSPENPTDRRILVVLDDIGLKSSHSIFFKSLQTRGSELDFKLADDPKISLQRYGQYLYDGLILFSPTTERFGGSLDLGAILDFVDSGHDLIITTDASASGLIRSIATECGVDFDEDPSAMVIDHTSYAVSDTEGDHTLIASDDFIQSDVILGSTTIEAPVLYKGIGHSLNSANSLVLKVLSASPSAYSADPNSKLSSPPLLTGLAISLVSVVQARNNARIMISGSLEMFSNRLFQSSAQKAGSSNRYEKSGNEQFVTELSKWIFHERGHLKAANVRHHKVGETDEPAMYRINDDLEYSVEIHEWSGKSWEPYVSNDVQIQFYMMSPYVLKTLSSDQKGKYFTSFKVPDVYGVFQFKVEYQRLGYTSLSLLKQIPVRPFKHNEYERFIKTAFPYYGASFSAMAGFFIFTIVYLYYK* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1079 435 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 7 435 IPR005013 GO:0005789|GO:0018279
Vvi4g1079 435 Pfam Oligosaccharyltransferase 48 kDa subunit beta 30 435 IPR005013 GO:0005789|GO:0018279
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1079 Vvi-Chr4 17616146 17626993 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1079 K12670 - vvi:100244523 865.144