Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1078 ATGAATACTGTGAATCTGGGCACATGGGTGCATACCTCTTATGTGTTCAATCACGGGGGTAGATTAAAATCCCCGGTCTTGAGCCGTATGCTTCATCCTCTGAAGAACCCATCCTTTCCGATGTTGTCTCAGAGGTCTGGACGACCCATGTCTCTGGTGGCGGTTCTCACCAAGGAGGAGATGGTTAGAGGAGGGGACACCCCAGAAGAAGAGAAGCCCGCTTTCAATTTCAACGCTTACATCCTTGATAAGGCTAATTCCGTCAACAAAGCTTTGGACGACGCCGTTCCCATTAGGGAACCTGTGAAGGTCCACGAGTCGATGCGCTACTCCCTTCTCGCCGGCGGCAAACGTGTCCGTCCCGTTCTCTGTATCGCGGCCTGCGAGCTGGTGGGCGGGGATGAAGCTACGGCGATGCCGGCTGCTTGTGCGGTGGAGATGATTCACACCATGTCTTTAATGCATGATGACCTTCCTTGCATGGACAACGACGATCTACGCCGTGGAAAGCCCACAAATCACAAGGTCTTCGGTGAGAATGTTGCCATTCTCGCCGGAGACGCTCTTCTGGCGTTTGCGTTCGAGCACATGGCCACAGCGACGGTTGGAGTTCCGCCGGGGTGGATAGTTCGTGCAGTCGGCGAATTGGCGAAATCGATTGGGTCAGAAGGACTTGTTGCAGGGCAAGTGGTTGATATATGTTCTGAGGGCTTGAAAGATGTTGGATTGGAACATCTCGAATACATCCATGTTCACAAGACCGCAGCTCTACTTGAGGGGGCGGTAGTTCTTGGGGCGATTCTCGGAGGAGGATCAAATGAGGAAATTGAAAAATTGAGGAAATTTGCCAGATGTATAGGGTTGCTCTTTCAGGTGGTTGATGATATTCTGGATGTTACCAAATCCTCCCAAGAGTTGGGGAAGACTGCAGGCAAAGATTTGGTGGCTGATAAGCTCACGTACCCGAAGCTTCTGGGTATTGAGAAATCTCGGGAATTAGCTGAGCAACTGAATAAGGATGCCAAGGACCAGCTCTCCGGCTTCGATCCAGACAAGGCCGCCCCTTTGATTGCTTTATCTAATTATATTGCTTACAGGCAAAATTGA 1107 0.5095 MNTVNLGTWVHTSYVFNHGGRLKSPVLSRMLHPLKNPSFPMLSQRSGRPMSLVAVLTKEEMVRGGDTPEEEKPAFNFNAYILDKANSVNKALDDAVPIREPVKVHESMRYSLLAGGKRVRPVLCIAACELVGGDEATAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGENVAILAGDALLAFAFEHMATATVGVPPGWIVRAVGELAKSIGSEGLVAGQVVDICSEGLKDVGLEHLEYIHVHKTAALLEGAVVLGAILGGGSNEEIEKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKLTYPKLLGIEKSRELAEQLNKDAKDQLSGFDPDKAAPLIALSNYIAYRQN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1078 368 SUPERFAMILY Terpenoid synthases 79 350 IPR008949 -
Vvi4g1078 368 CDD Trans_IPPS_HT 104 366 IPR000092 GO:0008299
Vvi4g1078 368 ProSitePatterns Polyprenyl synthases signature 2. 286 298 IPR033749 -
Vvi4g1078 368 FunFam Geranylgeranyl diphosphate synthase 74 368 - -
Vvi4g1078 368 ProSitePatterns Polyprenyl synthases signature 1. 153 169 IPR033749 -
Vvi4g1078 368 SFLD Isoprenoid Synthase Type I 79 366 - -
Vvi4g1078 368 Gene3D Farnesyl Diphosphate Synthase 69 368 IPR008949 -
Vvi4g1078 368 Pfam Polyprenyl synthetase 104 340 IPR000092 GO:0008299
Vvi4g1078 368 SFLD Polyprenyl Transferase Like 79 366 - -
Vvi4g1078 368 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 62 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1078 Vvi-Chr4 17612949 17614055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1078 K13789 - vvi:100266842 718.768