Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1076 ATGGCCTTGCAAGAAAGTTTAGCTAAATTCAAGAAGCAACAAGAGAAGTGCCAATCGACTCTCACCAGCATTGCAGCCAAAGCAGTATCCTCTAAGCCCTCAGTGCCTCAAAACTTTACCCCAGCAGCTCCTACAAAGCCTCCTACACCTGCAGTAAAATTCTCCAATGACACTGAGAGACTCCAACATATTAACAGCATAAGGAAAGCCCCTGTTGGAGCTCAGATTAAACGTGTTATAGACTTGCTGCTAGAGACAAGGCAAGCCTTTACACCGGAACAAATAAATGAAGCATGTTATGTTGATATGACTGCCAACAAAGCTGTCTTTGACAGTTTGAGGAATAATCCAAAAGTGAACTATGATGGGAAGCGCTTTTCGTACAAGTCCAAGCATGACTTAAAGGACAAGAGTCAGCTGCTTGTCTTAATAAGAAAATTTCCAGAGGGCATTGCAGTCATTGACCTACTCCAGTGTACTGGAGGATTTACAGGCTTTGAAAGCTGCAGGGCAGGTTTGGCTGCTGTCGAACTTTGA 537 0.4376 MALQESLAKFKKQQEKCQSTLTSIAAKAVSSKPSVPQNFTPAAPTKPPTPAVKFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDMTANKAVFDSLRNNPKVNYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLLQCTGGFTGFESCRAGLAAVEL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1076 178 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 160 IPR016656 GO:0005673|GO:0006367
Vvi4g1076 178 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 60 135 IPR003166 GO:0006367
Vvi4g1076 178 Pfam TFIIE beta subunit core domain 74 133 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1076 Vvi-Chr4 17599236 17600788 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1076 K03137 - vvi:100261481 325.865