Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1073 ATGTTCAGGTTTTTGGGTGCCCATGGATATATTGGAAAAAGGATGCTTTTTTCGGCTATGGGGAGTGATCGGGCTTTTGGGTATTGGAAGAGCTCCATTAGAGCCTTACATTCCCTTCACCAATTCAGACAAAAGAAACCTGTTCAGAGAACTAGTCAAAAGTTTAGGAAACCGACTGAGAAAGAAAATGTAGACCATAAAATTTACATGAGGGATACCATTGGAAATATATCTAAAATATTAAGGTATTTGACTTGGGATTCTGCTCAAGAACAGCTAGAAAAGCTCTCCATAAGATGGGATTCTTATACTGTCAATCAGGTCCTGAAATCCCATCCACCAATGGAGAAGGCTTGGTTGTTTTTCAATTGGGCTTCTCGGTTAAAGGGTTTTAAGCATGACCAGTTTACCTACACAACGATGCTGGATATATTTGGAGAAGCTAGGAGGATTGAGTCCATGAATTATGTTTTTCAGCAGATGCAAGAGAAAGGAATTAAGACTGATGCAGTTACTTACACATCACTGATGCATTGGTTTTCCAATGATGGGGATATTGAGAGAGCTGTGAGGGTGTGGAAGGAGATGAAAGCTAAGGGCTGTTGTCTGACAGTCGTTTCTTATACTGCTTATATGAAGATTCTATTTGATAATAAAAGAGTGAAGGAGGCAGCTGATGTTTATAAGGAGATGCTTCAATCTGGATGTGCTCCAAATTGTTACACTTACACCGTCTTAATGGAGCATCTAACTGGTTCTGGCAAATATAAAGCAGCTCTTGAGATTTTTAGCAGAATGCAAGAAGCAGGGGTACAACCTGATAAAGCAACATGCAATATTTTAATTGAGAAATTTTGCAAAACAGGGCAGACATGGGCAATTACCCAAATTCTTCTGTATATGAAAGACAACTTCCTAGTCCTTCGGTACCCTGTATATCTGGAAGCCCTTCAAACATTAAAAGTTGCAGGTGAGAGTGATATCCTCCTCAGGCAAGTAAATCCTCATTTGAACGTTGGGTTGAGCAGCAAGGAGGAGATTGTTGAGTTTAAAGAAACTGTTGCTGATGTTCACTCCACTATAGATAGAGGATTTGTATTACTTTTTTTGACAAAGCAAAATTTTTATGCCATTGACTGCTTGCTTACTGGGATGATCCATAAGAATACTCGATTAGATTCTGTGATTATTTCACAGATCATTGAGGTAAATTGTGCTCATTGCAGAATCAATGGTGCATTATTGGCTTTTGAATACAGTGTGAAAATGGGCATAAACATAGAAAGGATAGCCTATCTTGCACTGATGGGTGTTTTCATCAGAGCGAATTCATTCCCAAAGGTTGCAGATATTGTTGAGAAGATGGTGAGGGCTGGAATTTCCCTTGGAATGTATTTGGGTGCACTCTTAATCTATAGACTTGGTTGTGCTAGAAGGCCTGGTTCTGCTGCAAAGGTTTTTGGTTTATTGCCTGACGACCAGAAAGGCACTGCTGCTTACACTGCTTTGATCAGTGCCTACTTCTCTTCTGGAAATGTTGACAAAGGACTTAAAATTTACAAGACCATGCAAAGGAAAAGGATTCATCCTGCCTTAGGCACATACAATTTACTATTAGCTGGTCTCGAGAAAAAGGGTAGAGCACGTGAAGCAGAAATCTATAGGAAGGAAAAGAAGACATTACACACTCATGGTCATTCCCAAGATATTGTTTCCATGGATGAAAAGATTTGTAACCTTCTATTTTCTGGAAATTTGGTATCATGA 1767 0.3928 MFRFLGAHGYIGKRMLFSAMGSDRAFGYWKSSIRALHSLHQFRQKKPVQRTSQKFRKPTEKENVDHKIYMRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDEKICNLLFSGNLVS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1073 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Vvi4g1073 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Vvi4g1073 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Vvi4g1073 588 Gene3D Tetratricopeptide repeat domain 234 304 IPR011990 GO:0005515
Vvi4g1073 588 Gene3D Tetratricopeptide repeat domain 30 233 IPR011990 GO:0005515
Vvi4g1073 588 Gene3D Tetratricopeptide repeat domain 492 562 IPR011990 GO:0005515
Vvi4g1073 588 Pfam PPR repeat family 134 179 IPR002885 -
Vvi4g1073 588 Pfam PPR repeat family 204 249 IPR002885 -
Vvi4g1073 588 Pfam PPR repeat family 496 542 IPR002885 -
Vvi4g1073 588 NCBIfam pentatricopeptide repeat 136 169 IPR002885 -
Vvi4g1073 588 NCBIfam pentatricopeptide repeat 206 240 IPR002885 -
Vvi4g1073 588 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
Vvi4g1073 588 NCBIfam pentatricopeptide repeat 499 530 IPR002885 -
Vvi4g1073 588 NCBIfam pentatricopeptide repeat 241 274 IPR002885 -
Vvi4g1073 588 PANTHER OS03G0856100 PROTEIN 377 552 - -
Vvi4g1073 588 Pfam Pentatricopeptide repeat domain 262 304 IPR002885 -
Vvi4g1073 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Vvi4g1073 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Vvi4g1073 588 Gene3D Tetratricopeptide repeat domain 377 491 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1073 70 559 Glycosyltransferase AT1G05670 20.710 1.35e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1073 - - vvi:100256542 1181.78