Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1069 ATGCCTGCAACTGCACCTCTTCTCCGCCTCTTCCTCTTCCTTTGTGGGATCATCTACTTTTTGGCCATTCATGCTACGGCTTACCAATTCAGAGAAGCCCCGCAGTTCTACAACTCCCCTGACTGCCCGTCCATCAACTACGACGACGCTGAAGGTTACAGTCATGAAACCAGCATATGTTCCGATGATGCAGTCCATGTGGCAATGACCCTCGACGCCGCCTACATCCGTGGCTCCATGGCTGCCATTCTCTCCGTTCTCCAACACGCCACCTGCCCTGAAAACGTAAACTTCCACTTCGTCGCCTCCGCCTCCGCTGATGCCCACCACCTCCGTCGCACCATTGCCAACTCCTTCCCTTATCTGCGCTTCCGAGTCTACCGCTTCGATGACTCGGCTGTCTCAGGCCTCATCTCCACTTCAATTCGCGCTGCTCTCGACTGCCCGCTCAACTACGCTCGCAACTACCTCGCCGATCTCCTCCCTACGTGTGTTCGTCGAGTGGTGTACCTGGACTCAGACTTGGTCCTAGTCGACGACATTGCGAAACTGGTAGCTACCCCACTCGGTGACCACTCGGTCTTAGCGGCGCCGGAGTACTGTAATGCTAACTTTACCTCTTATTTTACGCCCACGTTTTGGTCGAACCCATCTCTGTCTCTAACGTTCGCGGGTCGCAATGCCTGTTACTTCAACACCGGCGTCATGGTCATCGACCTCCAACGGTGGAGAGCCGGAGACTACACCACCAAGATCGTGGAATGGATGGAGCTCCAAAAACGAATGCGGATCTACGAATTGGGTTCCTTACCCCCATTTTTACTGGTTTTCGCAGGGAATATAGCTCCGGTGGATCACAAATGGAACCAACATGGTCTCGGCGGAGACAATTTCCGGGGCCTATGCCGGGATCTACACCCGGGCCCTGTGAGCCTTCTACATTGGAGCGGGAAGGGGAAGCCATGGGCTCGATTAGACGCAAACAGGCCGTGCCCATTGGATGCGTTGTGGGCTCCTTACGATCTCTTGAAAACACCATTCGCACTCGACAATTAA 1056 0.5464 MPATAPLLRLFLFLCGIIYFLAIHATAYQFREAPQFYNSPDCPSINYDDAEGYSHETSICSDDAVHVAMTLDAAYIRGSMAAILSVLQHATCPENVNFHFVASASADAHHLRRTIANSFPYLRFRVYRFDDSAVSGLISTSIRAALDCPLNYARNYLADLLPTCVRRVVYLDSDLVLVDDIAKLVATPLGDHSVLAAPEYCNANFTSYFTPTFWSNPSLSLTFAGRNACYFNTGVMVIDLQRWRAGDYTTKIVEWMELQKRMRIYELGSLPPFLLVFAGNIAPVDHKWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLKTPFALDN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1069 351 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 13 344 - -
Vvi4g1069 351 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 66 331 IPR029044 -
Vvi4g1069 351 SUPERFAMILY Nucleotide-diphospho-sugar transferases 65 343 IPR029044 -
Vvi4g1069 351 FunFam Hexosyltransferase 66 331 - -
Vvi4g1069 351 Pfam Glycosyl transferase family 8 66 324 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1069 Vvi-Chr4 17554222 17555277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1069 9 349 Glycosyltransferase AT3G50760 69.477 5.29e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1069 K20893 - vvi:100240984 723.005