Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1068 ATGTCACCATCTTACTGTATCAAGGAGAAGAAGCCCTGCGTCGGATGGGTTGACAAGTACTTTGGGGACTGTCTGTGCAGTCTCAGAGACGAGTTCTCCTTTGGGTTTGGTCTTATCAGTTTGGTTTGTTGGGGAGTTGCAGAAATCCCTCAGATAATCACCAACTTCCGCACAAAATCTAGCCATGGAGTCTCTCTTGCATTTCTGCTCACTTGGATCGCCGGCGACGTTTTCAATTTGGTTGGTTGCCTTCTCGAACCAGCAACACTGCCCACCCAGTATTACACAGCTCTGCTATACACCACGAGTACTGTAGTACTAGTGTTGCAGAGCGTCTACTATGATGACATCTATCCATGGTGGAAGTACGGACAGATCAACTCTAATCAAGTGGTTGAAGAAGAGAGAAAACCTCTGAAACCTAAAGCTGGTGGGTCAGGGATTCCCATACCCAATACTCCAGTCAAAGCAGGATCCACTCTTCGGGATTATTACTATACGTCAGCGAGGTCACTGGCAGGAAGCACTACTCCACCATTTCGATCTTATCTCAGGACGGCTCGAAGTGGTCCTTCGACTGTGGGGCTTGACAACGACTCATCATCTGATGATGACACAACCCACGTTGCATCCCATAAGACTGTTAGCAAGCCTAAGCCAATCCCACGGTCGGCAGGCTATGGGGCATATTTAGCTACGTCCGTCAATTTGCCTCGGCAAAGTAAAGCTATGATGGAAGTGTCTCTTGGATTTACAGGGAGAAAACTCTTACACCAGGAAAGTGGGATGGAGAACAGTGCCTTCGGGCAATGGTTAGGATGGTTGATGGCTGCTATATACATGGGCGGTCGACTCCCTCAGATATGGTTAAATATTAAAAGGGGGAGTGTGGAGGGCTTGAACCCTCTCATGTTCGTTTTTGCACTCATTGCCAATGTAACTTATGTGGCAAGTATTCTTGTAAGAACCACCGAATGGGAAAAAATTAAAGCTAATATGCCCTGGTTGCTGGATGCTGCAGTTTGTGTGATGCTTGACTTATTTATTATATTGCAGTACATATATTATAAGTACCTCCGAAAGAAAATTTCAAGTGCTGGAGAAGACCTGGGAGATTATATTGCGGCAAATAAAGCAGTTGTGTCTTGA 1149 0.4595 MSPSYCIKEKKPCVGWVDKYFGDCLCSLRDEFSFGFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWIAGDVFNLVGCLLEPATLPTQYYTALLYTTSTVVLVLQSVYYDDIYPWWKYGQINSNQVVEEERKPLKPKAGGSGIPIPNTPVKAGSTLRDYYYTSARSLAGSTTPPFRSYLRTARSGPSTVGLDNDSSSDDDTTHVASHKTVSKPKPIPRSAGYGAYLATSVNLPRQSKAMMEVSLGFTGRKLLHQESGMENSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALIANVTYVASILVRTTEWEKIKANMPWLLDAAVCVMLDLFIILQYIYYKYLRKKISSAGEDLGDYIAANKAVVS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1068 382 SMART ctns 282 313 IPR006603 -
Vvi4g1068 382 SMART ctns 46 77 IPR006603 -
Vvi4g1068 382 MobiDBLite consensus disorder prediction 186 200 - -
Vvi4g1068 382 FunFam PQ-loop repeat family protein / transmembrane family protein 32 128 - -
Vvi4g1068 382 Pfam PQ loop repeat 269 326 IPR006603 -
Vvi4g1068 382 Pfam PQ loop repeat 32 88 IPR006603 -
Vvi4g1068 382 Gene3D - 269 371 - -
Vvi4g1068 382 Gene3D - 35 117 - -
Vvi4g1068 382 MobiDBLite consensus disorder prediction 186 220 - -
Vvi4g1068 382 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 2 359 - -
Vvi4g1068 382 FunFam Vacuolar membrane PQ loop repeat protein 268 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1068 Vvi-Chr4 17548655 17551423 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1068 K23678 - vvi:100240998 730.709