Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1067 ATGCAATTTCCTCCCACGCAAAACCTTGCACTCTATATAAGCAGGAGTCTCAGGTTAAGTCTCCATAGGCGTTCACCCAAGTCCAGCTCGGCGTCAAGCTCTCCTCCCTCCCCTTCGTGTTCCCTTCAGCCGAAAGGTAACGCAAAGGAGGATGAGCTGAAACAAGTTTTCCGACATTTTGACAGCGACGGGGATGGAAAGATCTCAGCACTAGAGCTTAGAGCCTATTTTGGATCCATTCAAGAATACATGTCACACGAAGAGGCTCAAGCAGCGATCAATGATCTGGACACGGACGGTGACAACCTGTTGGACTTTCAGGATTTTGTGAAGCTGATGCAAAGGGAAGACGGGAATCAGGAGGATCTTAAAAGGGCCTTTGAGATGTTCGAATTGGAGAAGGGGTCTGGGTGCATAACCCCCAAAGGCTTGCAAAGGATGTTCAATCGCCTGGGAGATGAGAAATCCTACGACGAGTGCGTCGCCATGATTCAAGTGTTCGATATAGATGGCAACGGAGTGCTGGATTTCCAGGAGTTTCATCAAATGATGGCTTAA 558 0.4857 MQFPPTQNLALYISRSLRLSLHRRSPKSSSASSSPPSPSCSLQPKGNAKEDELKQVFRHFDSDGDGKISALELRAYFGSIQEYMSHEEAQAAINDLDTDGDNLLDFQDFVKLMQREDGNQEDLKRAFEMFELEKGSGCITPKGLQRMFNRLGDEKSYDECVAMIQVFDIDGNGVLDFQEFHQMMA* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1067 185 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Vvi4g1067 185 PANTHER CALCIUM BINDING PROTEIN 104 184 - -
Vvi4g1067 185 CDD EFh 122 185 IPR002048 GO:0005509
Vvi4g1067 185 Gene3D - 118 185 - -
Vvi4g1067 185 SMART efh_1 52 80 IPR002048 GO:0005509
Vvi4g1067 185 SMART efh_1 159 185 IPR002048 GO:0005509
Vvi4g1067 185 SMART efh_1 88 116 IPR002048 GO:0005509
Vvi4g1067 185 SMART efh_1 122 151 IPR002048 GO:0005509
Vvi4g1067 185 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Vvi4g1067 185 CDD EFh 52 114 IPR002048 GO:0005509
Vvi4g1067 185 MobiDBLite consensus disorder prediction 22 48 - -
Vvi4g1067 185 FunFam Calmodulin 1 90 185 - -
Vvi4g1067 185 Gene3D - 36 117 - -
Vvi4g1067 185 MobiDBLite consensus disorder prediction 23 44 - -
Vvi4g1067 185 SUPERFAMILY EF-hand 47 184 IPR011992 -
Vvi4g1067 185 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Vvi4g1067 185 ProSiteProfiles EF-hand calcium-binding domain profile. 155 185 IPR002048 GO:0005509
Vvi4g1067 185 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vvi4g1067 185 Pfam EF-hand domain pair 136 184 IPR002048 GO:0005509
Vvi4g1067 185 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Vvi4g1067 185 Pfam EF-hand domain pair 51 114 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1067 Vvi-Chr4 17529708 17530457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1067 4 185 EF-hand Containing Proteins AT3G50770 55.556 2.92e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1067 K13448 - vvi:100263254 303.908