Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1062 ATGTACGTCAAGCAGCTCTTCCGAAAATTATGTCTATTTAACAATCCAATGCAGCAAACTCGATACTTTACCCATAACCCTTTCTCTGGTAAAATCTCTCTTTACCTCCATCGAGCCAGACTCATTGATTCAATTCGACTCATTCTCCGCTCCAACGCTCCAAGATCGCTCATCCCTCTCTTAAATGATCCCACTGTTGACTCTTTTGTGGTTGCTAATGCCCTTCAGTCTGCTCCCTCACCAGACTCTGCCCTTTCCCTGCTTGAAATCCTAAAAACAATTCCACATTTCTGTCACACCCAAGCCACCATACGTGCACTGGCCAAAATCCTTGCCAAGTCCCAACGAAGTGCTGAACTCAAAAGCTTGGTTGATGACATCAACGCAGGCAAATTTTGGAATGTTCGTATCAGCTTTATGGAGCTCATGAAGTGGCATGCTGCAGCTGGAGACCTGGAGTCAGTTCTCCATGCATGGAACAGATATAGAGTTTCAGGCAAGCAGGTGTCTATAGAGGCTTACAACATTGTCATGCGCCTTTATGTACAGATGGGTAAGGACTCTGAGGCTATGCAGATTTTCCATAAGATTATTTCTGAAGGGGCAATTCCTAATTCTAGGACATACACAGTTGTGCTTGAGCACCTTGCCAACTCGGGAAAATTAGATTCAGCAATTAAAGTTTTTAATATATTGCCATTGATGAGGATCAGACGCACTTTAAGGCAGTATTCAATTTTGGTAGAAGAATTCACCAGTATCAATCGGTTTGATGTGGTTAAGGCCTTACTTGATGAGATGCAGATTGATGGAATATTGCCCGGTAGAGCAATGCAACTGTCATTGCAACGTATGCAGGAGGCAGGTTTCGTCCACGAGACAGATGAATTTCTTAGGGGAATGTTACCAGATGAGAGAATCAAGAATGTAGGCTTTTGTTTGAAACCATGGTTGGATCCTAGAGCTTTGGCCAATGCCTTAAATAATTGGGACCCTAATGAGGTATTAGCCCTGGAGGAAGCAAAATTCATCTGGACAACTCGGTTGGTTTGCAAGATCCTTAGGAATTTCAATTCCCCTGAGACAGCTTGGAAATTCTTCTGTTGGGTTGCTTATCAGCCAGGAGGATTCAATCATAACATTTATACTGTGCAAAGAATGATGACCCTTTTAGCACGCCATGGACATGTTGAATTGGTTGAAAAGCTCCTGCTCAAAATAAGAAGGGAGGAAATTAGATTGCCAGTCAGCACCATCAGATTGATCATAGACTTTTATGGAATTTCAAGGAATGCCGATGCTGCTCTAAAGGTCTTCCATGATGCTGAATCACTGTGCGGTCCCATGTCAAAATTATATTTGATGCTGTTGTATTCATCTCTTTTACGAACATTGACCAAATGTGGGAGGAGTGCTGATGCCTTGGATGTACTTGAGCAGATGTTTTTGGGTGGGATTTGCCCGGATGTCCCAACATTTTCTGGGTTGATGTACCATTTTGCCCTTGAAGGCGATTTTAAAACAGTGCAAAAACTCTTTATGATGGTTAGGCAGAGTGGTGTAGAGCCAGATGCCTACATGTTTAAGGTTCTGATCCATGGATATTGTAAGTGTGAGAGATCTGCTCTTGCATTGAGGGTTTTTGAAGACATGAGGAGCTTGAATTTGATGCCCGATGCTGCCACCAAAAATTTGCTTGTGAAGTGTCTTTGGAAGGAAGGCAGGCGGAGGGAGGCTGCTTCTGTGGAGGAGAGATGTGAAGAGATAAATTACGGCCTTCCATTTGCATTACGTGGTCATATGTGGACAATGAGCTCAGCAGACCTCAAAAGAGTGTATGATATTTATTCCAATAGCTTTGCTGCAGCCAAAGGGCCAAATTTACAAATGGAGTTGGGAAGTAAGCACTGA 1911 0.4312 MYVKQLFRKLCLFNNPMQQTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPLLNDPTVDSFVVANALQSAPSPDSALSLLEILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNVRISFMELMKWHAAAGDLESVLHAWNRYRVSGKQVSIEAYNIVMRLYVQMGKDSEAMQIFHKIISEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSILVEEFTSINRFDVVKALLDEMQIDGILPGRAMQLSLQRMQEAGFVHETDEFLRGMLPDERIKNVGFCLKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQRMMTLLARHGHVELVEKLLLKIRREEIRLPVSTIRLIIDFYGISRNADAALKVFHDAESLCGPMSKLYLMLLYSSLLRTLTKCGRSADALDVLEQMFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVLIHGYCKCERSALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINYGLPFALRGHMWTMSSADLKRVYDIYSNSFAAAKGPNLQMELGSKH* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1062 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Vvi4g1062 636 PANTHER OS01G0167750 PROTEIN 314 623 IPR044175 -
Vvi4g1062 636 Pfam PPR repeat 458 482 IPR002885 -
Vvi4g1062 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Vvi4g1062 636 Pfam PPR repeat family 523 570 IPR002885 -
Vvi4g1062 636 Pfam PPR repeat family 171 217 IPR002885 -
Vvi4g1062 636 Gene3D Tetratricopeptide repeat domain 458 607 IPR011990 GO:0005515
Vvi4g1062 636 Gene3D Tetratricopeptide repeat domain 336 457 IPR011990 GO:0005515
Vvi4g1062 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Vvi4g1062 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Vvi4g1062 636 Gene3D Tetratricopeptide repeat domain 72 306 IPR011990 GO:0005515
Vvi4g1062 636 NCBIfam pentatricopeptide repeat 458 490 IPR002885 -
Vvi4g1062 636 NCBIfam pentatricopeptide repeat 527 560 IPR002885 -
Vvi4g1062 636 NCBIfam pentatricopeptide repeat 173 205 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1062 119 627 Glycosyltransferase AT1G05670 20.077 3.29e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1062 - - vvi:100254703 1222.99