Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1047 ATGGAGCCAGTGAAGATGATCGGAGCTGATGGAAACAACGTTGGGCAAACCGTCGATCCACTCCCATTTGCTAGAAGTTATCAGATTGAAGCCCTCGAGAAAGCAATTAAGCAAAACACCATAGTGTTTCTCGAGACTGGCTCTGGGAAAACCCTGATTGCTATAATGCTCCTGCGCTACTATGCCCATCTCCTCCGGAAACCATCGCCTTTCATTGCCGTTTTCTTAGTCCCTAAAGTTGTTTTAGTTCCTCAGCAAGCAGAAGCTGTGAAAATGCACACTGACCTCAAAGTGGGCACGTATTGGGGAGATATGGGAGTTGATTTCTGGGATGCTGCAACTTGGAGGAAAGAACAAGACAAGCATGAGGTGCTTGTAATGACACCCGCAATTTTACTCAATGGCTTGAGGCATAGCTTTTTCAAATTGGACATGATTAAGGTTTTGATATTTGATGAATGCCATCATGCCAGGGGCAAAGACCCTTATGCTTGCATTATGAAAGAGTTCTATCATGAACAAGTACGGTCTAATAACTCTAATCTTCCTCGGATATTTGGAATGACTGCTTCCCCTATAAAGACCAAAGGGACAACATCAACATGGTCCTGTGGTAAAAATATGATTGAACTGGAGAATCTTATGAACTCAAAGATATACACAAGTGTTAGTGAAGCTGTATTGGCTGAGTTTGTACCATTCTCAACTCCAAAGTTGACGCATTATAAAGACAAGGATATCCCATCTGCCTTATTTGAGAATGTAGCACATCAATTAGAGATTTTGAAGAATAAGTATGAACACTCTCTAGAAAGCTTGAATCTCATGGAATCTACAAAGGAATCTGCTAGGAAAAAAATATCCAAGCTATTTTCTGCATTTTTGTTTTGTTTGAATGACCTTGGGCTCTGGTTGGCTTTAAAGGCTGCTGAGTTCTCGTTTTGTGATGATATGGACATCTGTTGCTGGGGACAGTTGGATTTGTCTGGTGAGGAAATAATTAAAAATTTCAATAAGGATGCATACAAAGTGATCTCGACATATTTACCATCTGATCGAGAGCTTTCTGTTGGTGATGATCTGGAAGCTGATGCAGAGTCCGGGTTCCTAACGACAAAAGTTATTTGCCTCGTTGGGTCTCTTCTTCAATACAGGCATTTAAAGAATTTGAGATGCATAGTTTTTGTTGAAAGGGTCATTACAGCTATTGTTCTTCAAAAACTGCTAAGTAAGTTGCTTCCCAAATTAAGTGGTTGGGAAGCAGGATATATAGCAGGGAATGCTTCTCAATTGCAATCTCAAAGTAGGAGAGTGCAAAATGCACTTGTTGAAGAATTTCGCAAAGGCATGGTGAATGTTATTGTTTCAACATCGATCCTTGAGGAGGGTTTAGATGTTCAGAGTTGCAACTTGGTCATAAGATTTGATCCCTCAGCCACAGTTTGCAGTTTTATACAGTCCCGAGGTCGTGCTAGAATGCAGAATTCTGATTACTTATTAATGGTGAAAAGTGGGGATGATAAAACACTTTCAAGGCTACGGACCTATCTTGATAGTGGAAAAGTAATGAGGGAAGAGTCCTTACGCAATGCCTCCCTCCCTTGTGCACCTCTCAAAAGTAGTTTGGATGATGAAGAGTTCTATTGGGTTGAAAGTACTAGAGCAATAGTGACTCTGAGTTCCAGCATTGGGTTGTTATACTTCTACTGTTCCCGGCTCCCTTCTGATGGATATTTTAAACCGACTCCTAGGTGCTCTATCAATCAGGACATGGGGACTTGCACCATATACCATCCTAAAAGCTGCCCAATACAAACTGTTTCTGTGCGAGGCAACATTAAAACACTGAAGCAGATTGCATGCCTTGAAGCATGCAAGGAACTACATAAAGCCGGAGCTTTAACTGATAATCTTGTGCCACAGATTGTTGAGGAAGAAGCTATTGTTGCACAAGATGAAAATATGCCTTACGATGATGAGCAGGCGACTTATTATCCACCAGAGTTGATTAATCCTTCATTAAAGGATCCAGTCACCCCATATCATTGCTACTTAATTGAGTTGGACCAAAAGTACGAATATGAAGTTTCTCCTCAGGGTATTGTGCTTGCTGTTAGGAGTGAACTTGAATATGATGTTGGAAATGTAAATTTTGACTTGCAAGTTGATAGGGGTACTATGACTGTGAGCATGAATTATGTTGGAGTGATCCATCTTACTGCTGAGCAGGTTCTTATGTGTAGGAAGTTTCAAATCACTCTTTTAAGGGTTCTTATAGATCGTGCTATAGATAAAGGGGTTTTTGACAGATATGACTTAGGAAATGATCAAATGGTGGACTATCTCATGCTCCCGTCGACTAACTCACGGGAAATACCATCCATCGTTGATTGGAAATGTCTTGGTTCTGTTTTCTTTTCACATGAAAATGCTTCCAATCACATGGGTTGCTTCTTTCCAAGGATGCATACAAAAAGTGGTTTTGTTTGTAGTTGTACACTTAAAAATTCAATAGTGTACACTCCGCACACTAGCCAATTTTATTGCATCACTGGTATTTTGGGTGAATTGAACGGGAACTCGTTTCTTAGTTTGAAGAATGGAGGTCTTCTTACTTACAAGGAATATTATCGTCTAAGGCATGGAATTGAGTTGCAGTTTGATGGAGAAAAATTGCTTAAAGGAAGACGCATGTTTGTGGTACAAAACTATCTTCAGAGGTGCAGACAACAGAAGGAGAAAGAGTTGAGTAACACAACCGTCGAACTGCCTCCTGAGCTATGTGTTATCTTTATGTCTCCAATATCTATTAGTATTATCTATTCTTTCTCATTGATCCCATCCATCATGCATCGGATTGAGTCTCTACTACTTGCTGTCAATTTGAAAAATATACACCTCAACTATTGCAAGCAAAATGACATTCCAACTTTCAAGGTATTGGAAGCAATTACGACAAAGCATTGCCAAGAGGGATTTCATTTGGAGTCTTTGGAGACCCTTGGAGACTCTTTTCTCAAATATGCTGCAAGTCAACAGCTCTTCAAAACCTTTCAAAATCATCATGAGGGCCTTCTTAGTGTTAAGAAAGAAAGAATAATTTCTAATGCTTCATTGTGCAAGCTAGGATGTGACCGCAAACTTCCGGGTTTTATCCGTAATGAGTCTTTTGACCCTAAAAAGTGGATCATTGCGGGTGATCAATCTAGAAGCCATGTCTTTGGTGAAGAGTTACTTTCAAGTACCAGAAAGATCTATGTCAGTGAAAGAAGAAAGCTGAAAAGTAAGAGAATTGCTGATGTTGTTGAGGCACTAATCGGCGCATTCCTTAGCACAGGTGGTGAAACAGCAGCATTGATATTTATGAGATGGCTTGGTATAAATGTTGATTTTGTCAAAGTACCATACAAAAGAGACTTCCCAGTGATCCTGAAGAGGCATGTCAATGTCAGCTACTTAGAGTCAATATTGAATTACTCATTCCGTGATCCTTCTCTGCTAGTTGAAGCACTGACGCATGGTTCTTACATGCTTCCTGAGATTCCTAGATGCTATCAGCGGCTTGAATTCCTTGGGGATGCAGTATTGGATTATCTGATGACCATGCACCTGTACCATAAGTACCCCGGGATGTCACCAGGACTGTTGACTGACCTCAGGTCTGCCTCTGTCAACAATGATTGTTATGCACAATCTGCAGTGAAGGCTAAATTGCACCAACACATTCTCCATTCTTCACAAGAGCTTCACAGGCACATAGTTGTCACGGTTGGCAATTTTGACAAATTACCTGTGGAATCAACTTTCGGATGGGAATCTGAGTCATCTTTCCCCAAGGTACTGGGAGATGTCATAGAATCTCTGGCGGGAGCAATTCTTGTTGATTCAGATTACAATAAGGAGGTTGTCTTTCAGAGCATAAGGCCTCTTTTGGAGCCTCTCATTACGCCTGAAACAGTGAAGCTCCACCCTGCAAGAGAGCTGGGTGAACTCTGTCAGAAAGAACATTATGATATAAAAAGAGTTGTTGTATCTCAGAATGGCAAGGCTTCAGTTACAATTGAGGTTGAAGCAAATGGGGCGAAACACAAACATACAAGTACGTCAGATAAGAGAACTGCAACAAAATTGGCTTCGAAAGAAGTTTTGAAGTCTTTGAAGGAAAGCATAGCCCAGACAGGTAACTGA 4188 0.4069 MEPVKMIGADGNNVGQTVDPLPFARSYQIEALEKAIKQNTIVFLETGSGKTLIAIMLLRYYAHLLRKPSPFIAVFLVPKVVLVPQQAEAVKMHTDLKVGTYWGDMGVDFWDAATWRKEQDKHEVLVMTPAILLNGLRHSFFKLDMIKVLIFDECHHARGKDPYACIMKEFYHEQVRSNNSNLPRIFGMTASPIKTKGTTSTWSCGKNMIELENLMNSKIYTSVSEAVLAEFVPFSTPKLTHYKDKDIPSALFENVAHQLEILKNKYEHSLESLNLMESTKESARKKISKLFSAFLFCLNDLGLWLALKAAEFSFCDDMDICCWGQLDLSGEEIIKNFNKDAYKVISTYLPSDRELSVGDDLEADAESGFLTTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLPKLSGWEAGYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRARMQNSDYLLMVKSGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTPRCSINQDMGTCTIYHPKSCPIQTVSVRGNIKTLKQIACLEACKELHKAGALTDNLVPQIVEEEAIVAQDENMPYDDEQATYYPPELINPSLKDPVTPYHCYLIELDQKYEYEVSPQGIVLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLRVLIDRAIDKGVFDRYDLGNDQMVDYLMLPSTNSREIPSIVDWKCLGSVFFSHENASNHMGCFFPRMHTKSGFVCSCTLKNSIVYTPHTSQFYCITGILGELNGNSFLSLKNGGLLTYKEYYRLRHGIELQFDGEKLLKGRRMFVVQNYLQRCRQQKEKELSNTTVELPPELCVIFMSPISISIIYSFSLIPSIMHRIESLLLAVNLKNIHLNYCKQNDIPTFKVLEAITTKHCQEGFHLESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGINVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYDIKRVVVSQNGKASVTIEVEANGAKHKHTSTSDKRTATKLASKEVLKSLKESIAQTGN* 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1047 1395 FunFam Endoribonuclease dicer-like 1 364 528 - -
Vvi4g1047 1395 SUPERFAMILY RNase III domain-like 1148 1318 IPR036389 GO:0004525|GO:0006396
Vvi4g1047 1395 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1323 1388 IPR014720 -
Vvi4g1047 1395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 31 210 IPR014001 -
Vvi4g1047 1395 FunFam Endoribonuclease dicer-like protein 21 261 - -
Vvi4g1047 1395 Gene3D paz domain 820 934 - -
Vvi4g1047 1395 SUPERFAMILY PAZ domain 829 930 IPR036085 GO:0005515
Vvi4g1047 1395 SUPERFAMILY RNase III domain-like 978 1129 IPR036389 GO:0004525|GO:0006396
Vvi4g1047 1395 FunFam Endoribonuclease dicer-like 1 557 649 - -
Vvi4g1047 1395 SMART ultradead3 20 230 IPR014001 -
Vvi4g1047 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 510 IPR027417 -
Vvi4g1047 1395 CDD RIBOc 1165 1319 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 Gene3D Dicer dimerisation domain 557 649 IPR038248 -
Vvi4g1047 1395 FunFam Endoribonuclease dicer-like 1 1144 1318 - -
Vvi4g1047 1395 Gene3D - 24 280 IPR027417 -
Vvi4g1047 1395 ProSitePatterns Ribonuclease III family signature. 1186 1194 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 541 IPR001650 -
Vvi4g1047 1395 Gene3D Ribonuclease III domain 970 1128 IPR036389 GO:0004525|GO:0006396
Vvi4g1047 1395 ProSiteProfiles Ribonuclease III family domain profile. 958 1114 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 SMART riboneu5 978 1134 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 SMART riboneu5 1165 1320 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 Pfam Helicase conserved C-terminal domain 386 492 IPR001650 -
Vvi4g1047 1395 PANTHER DICER-RELATED 38 1392 - -
Vvi4g1047 1395 Pfam Type III restriction enzyme, res subunit 25 192 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vvi4g1047 1395 Pfam Dicer dimerisation domain 562 641 - -
Vvi4g1047 1395 Pfam Ribonuclease III domain 1186 1296 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 Pfam Ribonuclease III domain 996 1114 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 Gene3D Ribonuclease III domain 1146 1323 IPR036389 GO:0004525|GO:0006396
Vvi4g1047 1395 ProSiteProfiles PAZ domain profile. 834 932 IPR003100 GO:0005515
Vvi4g1047 1395 SMART helicmild6 407 494 IPR001650 -
Vvi4g1047 1395 FunFam Endoribonuclease Dicer homolog 2 970 1125 - -
Vvi4g1047 1395 ProSiteProfiles Ribonuclease III family domain profile. 1150 1297 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 Pfam PAZ domain 830 954 IPR003100 GO:0005515
Vvi4g1047 1395 CDD RIBOc 981 1132 IPR000999 GO:0004525|GO:0006396
Vvi4g1047 1395 SMART PAZ_2_a_3 809 958 IPR003100 GO:0005515
Vvi4g1047 1395 CDD DEXHc_dicer 24 221 - -
Vvi4g1047 1395 Gene3D - 368 525 IPR027417 -
Vvi4g1047 1395 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 562 648 IPR005034 GO:0016891
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1047 Vvi-Chr4 17332181 17344302 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1047 K11592 - vvi:100258190 2760.33