Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1044 ATGAAAGCAGCAGATAGCTCCTTCTGGGATGACCGTGCTAAAGCTCAAGAAACCCTTCTGGCGCTAACTGATGTCAAAGACAAAATAAAACTGCTTACAGATTTCAAAACGCAGGTTGAAGATGCTGAAACTATAGTTAAGCTTACTGAAGAGATGGACTCCATAGATACTGGGCTCCTTGAAGAGGCAGCCAACATCATTAAAGAATTGAACAAGGCATTGGATCGGTTTGAGTTGACTCAATTACTCTCTGGTCCCTATGACAAAGAAGGCGCTGTTATCTCTATCACTGCTGGTGCCGGAGGCACTGATGCGCAGGACTGGGCTGACATGCTTCTCAGGATGTATGTGAGATGGGGAGAGAAGCAGCGGTATAAGACGAGAGTGGTTGAAAAATCCATGGGAGAAGAAGCAGGTATTAAGTCAGCTACCATTGAACTCGAAGGCCGTTATGCGTATGGATATTTGTCTGGAGAGAAAGGAACACATCGAATTGTGAGACAGTCTCCTTTCAACGCCAAAGGTCTTCGTCAGACAAGCTTTTCTGGGGTTGAAGTCATGCCTCTCCTTCCTGAGGAGTCGATGGATGTTGAAATACCAGAGGAAGACCTGGAAATCAGTTTTTCCCGGGCGGGTGGAAAAGGAGGTCAGAATGTGAACAAGGTGGAAACCGCCGTCCGAATAACCCATATCCCCACCGGAGTCACTGTTCGCTGCACAGAGGAGAGATCACAACTAGCAAACAAGATAAAGGCTCTAAGCCGGTTGAAAGCCAAACTACTGGTGATAGCAGAAGAACAAAGAGCGTCTGAAATCAAGCAGATAAGGGGAGATGCAGTGAAGGCAGAGTGGGGGCAGCAGATAAGAAACTATGTATTCCACCCCTACAAGCTTGTGAAGGATGTACGGACAGGGTACGAGACATCAGATATTACTTCAGTCATGGATGGTGAGTTAGAACCCTTCATCAAAGCTTACCTCAAGTTCAAATTCAGTATGACTCTGTCTAAACAAAACTGA 1020 0.4608 MKAADSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAANIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPFIKAYLKFKFSMTLSKQN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1044 339 Gene3D - 94 324 - -
Vvi4g1044 339 Gene3D Release factor 1 87 - -
Vvi4g1044 339 SUPERFAMILY Release factor 3 331 IPR045853 -
Vvi4g1044 339 NCBIfam peptide chain release factor 2 2 328 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vvi4g1044 339 Hamap Peptide chain release factor 2 [prfB]. 1 331 IPR004374 GO:0005737|GO:0006415|GO:0016149
Vvi4g1044 339 SMART PCRF_a_2 47 159 IPR005139 GO:0006415
Vvi4g1044 339 Gene3D - 190 286 - -
Vvi4g1044 339 Pfam RF-1 domain 194 303 IPR000352 GO:0003747|GO:0006415
Vvi4g1044 339 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 2 330 - -
Vvi4g1044 339 Coils Coil 60 80 - -
Vvi4g1044 339 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 210 226 IPR000352 GO:0003747|GO:0006415
Vvi4g1044 339 Pfam PCRF domain 2 184 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1044 Vvi-Chr4 17285385 17295059 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1044 K02836 - vvi:100265078 662.529