Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1043 ATGCTCATCATTTCCATATTATTTCTTGCTTTCACCGCCACCCTCCTCTTCAGATTCGCCACTGCAGATGGCGATTTCACACTGCTCTCCAAGAGGCACCCCAAGCGCCAAGAAATCGAGGACAAGGTCGTTTGGATCACTGGTGCCAGCCGCGGAATCGGGGAGGTTCTTGCCAAGCAACTTGCGGGTTTGGGGGCGAAATTGATTCTTTCAGCGCGAAATGAGGTCGAATTGGAGCGAGTTAAGCAGCAGCTCAGAGGGAAGCATGCACCTGGGGAGGTGGAGATTTTGCCTCTGGATTTGGCAGGTGGTGAGGATTCTCTCAGGGAGGCTGTGGAGAAAGCGGAATCATTCTTTTCAGGGGCTGGTGTTGATTATATGATTCATAATGCGGCTTACGAGCGCCCTAAAGCATCAGCTGTGGATGTAACTGAGGAAAGCCTTAAGGCTACTCTCAATGTGAATGTTATTGGAACGATCTCTCTTACACAGTTGCTCGCACCTTTCATGCTGAAGCGAGGGAGGGGTCATTTTGTTGTGATGAGCAGTGCTGCAGGAAAGACACCTGCACCGGGACAGGCTGTGTACTCTGCTTCTAAATATGCTCTAAATGGATACTTCCACACCTTGCGTTCTGAGCTCTGTCAAAAAGGAATTAAGGTGACTGTTGTCTGTCCTGGACCAATAGAGACATCAAATGGTTCTAAAGCAAGCACTGAGAGGCGTGTGTCATCAGAGAGGTGTGCAGAGCTGACTATTATTGCTGCAACCCATGGTCTAAAAGAAGTTTGGATATCGTGTCAGCCTGTACTAGCGGTTATGTACTTGGTGCAGTACATGCCAACCATTGGCTTCTGGCTCATGGACAAGGTTGGTGCGAATCGAGTTGAAGCAGCTAAACAAAAGGGCAGCACTTACTCACTGGGATTACTCTTTGGGAAAAAGAAGGCAGCATGA 957 0.489 MLIISILFLAFTATLLFRFATADGDFTLLSKRHPKRQEIEDKVVWITGASRGIGEVLAKQLAGLGAKLILSARNEVELERVKQQLRGKHAPGEVEILPLDLAGGEDSLREAVEKAESFFSGAGVDYMIHNAAYERPKASAVDVTEESLKATLNVNVIGTISLTQLLAPFMLKRGRGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHTLRSELCQKGIKVTVVCPGPIETSNGSKASTERRVSSERCAELTIIAATHGLKEVWISCQPVLAVMYLVQYMPTIGFWLMDKVGANRVEAAKQKGSTYSLGLLFGKKKAA* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1043 318 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 317 - -
Vvi4g1043 318 PRINTS Glucose/ribitol dehydrogenase family signature 122 133 IPR002347 -
Vvi4g1043 318 PRINTS Glucose/ribitol dehydrogenase family signature 196 215 IPR002347 -
Vvi4g1043 318 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vvi4g1043 318 PRINTS Glucose/ribitol dehydrogenase family signature 43 60 IPR002347 -
Vvi4g1043 318 PRINTS Glucose/ribitol dehydrogenase family signature 170 186 IPR002347 -
Vvi4g1043 318 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 42 231 - -
Vvi4g1043 318 Pfam short chain dehydrogenase 42 239 IPR002347 -
Vvi4g1043 318 Gene3D - 24 295 - -
Vvi4g1043 318 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 289 IPR036291 -
Vvi4g1043 318 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 183 211 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1043 Vvi-Chr4 17272103 17283647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1043 46 244 Lipid Metabolism Gene Families AT1G67730 33.663 2.84e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1043 K11165 - vvi:100247868 601.668