Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1042 ATGTTGATCCACCGCCATCGCCAAATCCTTACAAACGCCCTTCACCTCCGCCACTTCTCCCAATCTGCTGCCGCCGCGGTTCTCCAGGACCCCCTTGAACCACCACCGCTTACGTACCTGGAAGGCTTCCCTAGACCCGATCCCAAATTCGCAGAAATCATACGCGCCATCCCTCGCACCATCTCCGGCAAGAACATCTCTGCCAAGGAGCGGAAAGTCGGCCGCGTCCCCAGCATTGTGTTCGAGCAAGAAGACGGTCAACACGGCGGCAACAAGCGACTCATTTCTGTGCGGACCAACCAGATTCGGAAGCTCGTCAACCACCTGGGCCGGTCTTTCTTTTTGTCGCGTTTGTTTGATCTCGAAGTCGGACCCGATTTTGAGTCCAATGAGGTCATCGAGAAAGTTCGGGTTTTGCCTCGAAAGCTTCATCTGCATGCAGGCACGGATGCAGTGCTTAATGTGACCTTTATAAGGGCCCCTTCTCACGCATTATTGAAGGTTGATGTTCCTCTTGTTTTTAGGGGAGAAGATGTGTCTCCTGGATTGAAAAAAGGGGCATATTTGAATACCATAAAAAGGACTGTTAAGTACCTTTGTCCAGCAGATATCATCCCTCCATATATTGATGTAGATCTAAGCGAGTTGGATGCGGGGCAGAAGATAGTCATGGGGGACCTCAAAGTTCATCCAGCTTTGAAGCTTCTTCGGTCAAAAGATGAACCAGTTTGTAAGATTATGGGAACAAGGGTTTCTGACCAAAGGAAATCTAAATAA 777 0.4955 MLIHRHRQILTNALHLRHFSQSAAAAVLQDPLEPPPLTYLEGFPRPDPKFAEIIRAIPRTISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVGPDFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGEDVSPGLKKGAYLNTIKRTVKYLCPADIIPPYIDVDLSELDAGQKIVMGDLKVHPALKLLRSKDEPVCKIMGTRVSDQRKSK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1042 258 CDD Ribosomal_L25_TL5_CTC 53 159 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g1042 258 Gene3D Ribosomal Protein L25; Chain P 53 160 IPR020056 -
Vvi4g1042 258 Pfam Ribosomal protein TL5, C-terminal domain 166 249 IPR020057 -
Vvi4g1042 258 Gene3D Ribosomal protein L25, beta domain 164 254 IPR037121 -
Vvi4g1042 258 FunFam 50S ribosomal protein L25 165 255 - -
Vvi4g1042 258 Pfam Ribosomal L25p family 55 157 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g1042 258 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 26 253 - -
Vvi4g1042 258 SUPERFAMILY Ribosomal protein L25-like 58 248 IPR011035 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1042 Vvi-Chr4 17262981 17265558 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1042 K02897 - vvi:100242725 513.457