Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1040 ATGGGGTTCCTTAGCAATAGTAGTGGGTTTAGTGATATGCTCAAGAAGCTTTTGCTACTGCCACTGCTCCTTTCCTTTCTCCTCACTTTCTCACTATCTGAGGTCATTTTTGAAGAGAGATTCGAAGATGGGTGGCAGAGTCGGTGGGTTAAATCAGATTGGAAGAAAAGTGAAGGGAAGGCAGGATCATTTAAGCACACGGCTGGCAAGTGGGCTGGAGATCCAGATGATAAAGGTATCCAGACATCTACAGATGCAAGGCACTTCGCCATATCTGCTAAGATTCCAGAGTTCAGCAACAAGAACAGAACATTGGTACTCCAGTATTCTATAAGGTTTGAACAGGAAATTGAATGTGGTGGTGGTTACATAAAACTTCTTTCTGGATTTGTCAATCAGAAGAAATTTGGGGGTGACACTCCTTACAGTGTAATGTTTGGACCAGATCTATGTGGTACACAAACAAAGAAGCTCCATGTTATAGTCTCCTACCAGGGCCAGAATTACCCTATCAAGAAGGATCTGCAATGTGAAACGGATAAGTTAACACATTTCTACACATTCATTCTTAGGCCTGATGCATCGTATAGCGTCCTGATTGACAATCGAGAGAGAGAATCCGGAAGCATGTATTCTGATTGGGATATCCTCCCCCCTCGAAAGATTAAAGACACCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGAGAATATATTGAAGATCCTAATGATGTCAAACCTGAGGGTTACGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCTAAAGAGCCTGATAATTGGGATGAAGAAGAGGATGGTTTATGGAAACCACCAAAAATACCAAATCCAGCATTCAAAGGACCATGGAGGCGGAAGAAAATTAAGAATCCTAACTACAAGGGGAAGTGGAAGAATCAATGGATCGACAATCCCGAATTTGAAGATGACCCTGATCTTTATGTACTAAAGCCAATTAAATATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTGCAATTTATGACAACATTTTGATTTGTGATGATCCAGAGTATGCAAAACAAGTTGTGGAGGAAGTATTTGCCCATAGGGAGTCTGAAAAAGAGGCATTTGAGGAAGCAGAAAAAGTGAGAAAAGCACGAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAGGAAGGTGAAAGAAGGAGAAGGGAGCGGGGCCATGATCGACGTTATCGAGATAGGGAGCGATACAGAGACAGATATAGAAGGCATCATCGCCGCGATTACTTGGATGATTACCATGATGAACTCTGA 1302 0.427 MGFLSNSSGFSDMLKKLLLLPLLLSFLLTFSLSEVIFEERFEDGWQSRWVKSDWKKSEGKAGSFKHTAGKWAGDPDDKGIQTSTDARHFAISAKIPEFSNKNRTLVLQYSIRFEQEIECGGGYIKLLSGFVNQKKFGGDTPYSVMFGPDLCGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSVLIDNRERESGSMYSDWDILPPRKIKDTKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKEPDNWDEEEDGLWKPPKIPNPAFKGPWRRKKIKNPNYKGKWKNQWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGAIYDNILICDDPEYAKQVVEEVFAHRESEKEAFEEAEKVRKAREEEEAQRAREEGERRRRERGHDRRYRDRERYRDRYRRHHRRDYLDDYHDEL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1040 433 PIRSF Calreticulin 13 424 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 Gene3D - 34 391 - -
Vvi4g1040 433 FunFam Calreticulin 219 320 - -
Vvi4g1040 433 PANTHER CALRETICULIN AND CALNEXIN 17 393 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 Gene3D Calreticulin/calnexin, P domain 219 320 IPR009033 GO:0005509|GO:0005515
Vvi4g1040 433 MobiDBLite consensus disorder prediction 374 406 - -
Vvi4g1040 433 Coils Coil 364 400 - -
Vvi4g1040 433 MobiDBLite consensus disorder prediction 227 247 - -
Vvi4g1040 433 ProSitePatterns Calreticulin family signature 1. 112 127 IPR018124 GO:0005509
Vvi4g1040 433 FunFam Calreticulin 1b 34 216 - -
Vvi4g1040 433 Pfam Calreticulin family 38 273 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 Pfam Calreticulin family 274 347 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 PRINTS Calreticulin signature 114 132 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 PRINTS Calreticulin signature 140 156 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 PRINTS Calreticulin signature 295 314 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 PRINTS Calreticulin signature 257 279 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 PRINTS Calreticulin signature 328 348 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 PRINTS Calreticulin signature 229 242 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vvi4g1040 433 MobiDBLite consensus disorder prediction 227 280 - -
Vvi4g1040 433 SUPERFAMILY P-domain of calnexin/calreticulin 215 330 IPR009033 GO:0005509|GO:0005515
Vvi4g1040 433 ProSitePatterns Calreticulin family signature 2. 144 152 IPR018124 GO:0005509
Vvi4g1040 433 MobiDBLite consensus disorder prediction 257 277 - -
Vvi4g1040 433 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 232 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1040 Vvi-Chr4 17238038 17244736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1040 13 355 Miscellaneous Gene Families AT5G61790 35.013 2.24e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1040 K08057 - vvi:100265011 743.421