Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1034 ATGGCGTCCTCTGTTCCCACTGCCACTGCCTCTGCTGTCACCAAGGCCGCCAATCACACCGCCGCCGCGCCCGCCGTGCTCGCTTACCCCCACTCGCGCTGCTCTCGCTCCAGAGTGTTTTTCCCTCGTAAGCCTGGTCTCCGATTCTCTGCCAAGGGTTTGCAGTCTAGATTGATACGTTCCCCCGTGGTGAAAGCCCAGTTGAATGAGCCATCTGTTGCATTCAAGGTTGTCGATGAATCACCTACACCACCCAAATCAGATGCACCAGCAGTGGAAGCAAAGGATGTTAAGTCATCAAACAAACCTTCGCCTGCGGCTTTGGCTTCTGAGGAATCAATCTCTGAGTTCATTACTCAAGTTGCAAGTCTTGTGAAGCTTGTTGATTCGAGAGATATTGTGGAGTTGCAGATGAAACAGCTTGACTGTGAACTAATAATTCGTAAAAAGGAGGCCTTGCCCCAACCACCATCAGCTGCTCCTGTTGTTATGATGCATTCCCCTCCCCCAGCAGCAGTTGCACCAGTAGGCCCACCTGCAGCTGTTCCTGCACCTTCTGCCCCAGCTTCTTCAGCCCCAACAACAGTACCTTCTGCACCTGCTGCCAAGTCAACCAATTCATCGCACCCACGTCTTAAAAGCCCCATGGCAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAGGTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAGCTGATCAATCAGGAACAATAGTCGAGATCCTTGCAGATGACGGCAAGTCTGTCAGCATTGACACTCCTCTTTTTGCGATCGAGCCTTGA 861 0.5122 MASSVPTATASAVTKAANHTAAAPAVLAYPHSRCSRSRVFFPRKPGLRFSAKGLQSRLIRSPVVKAQLNEPSVAFKVVDESPTPPKSDAPAVEAKDVKSSNKPSPAALASEESISEFITQVASLVKLVDSRDIVELQMKQLDCELIIRKKEALPQPPSAAPVVMMHSPPPAAVAPVGPPAAVPAPSAPASSAPTTVPSAPAAKSTNSSHPRLKSPMAGTFYRSPGPNEPPFVKVGDKVQKGKVLCIIEAMKLMNEIEADQSGTIVEILADDGKSVSIDTPLFAIEP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1034 286 Gene3D - 208 285 - -
Vvi4g1034 286 MobiDBLite consensus disorder prediction 188 213 - -
Vvi4g1034 286 MobiDBLite consensus disorder prediction 79 109 - -
Vvi4g1034 286 ProSiteProfiles Biotinyl/lipoyl domain profile. 209 285 IPR000089 -
Vvi4g1034 286 MobiDBLite consensus disorder prediction 180 213 - -
Vvi4g1034 286 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 8 278 - -
Vvi4g1034 286 FunFam Acetyl-CoA carboxylase biotin carboxyl carrier protein 203 285 - -
Vvi4g1034 286 CDD biotinyl_domain 212 284 - -
Vvi4g1034 286 Pfam Biotin-requiring enzyme 212 284 IPR000089 -
Vvi4g1034 286 PRINTS Acetyl-CoA biotin carboxyl carrier protein signature 246 259 IPR001249 GO:0003989|GO:0006633|GO:0009317
Vvi4g1034 286 PRINTS Acetyl-CoA biotin carboxyl carrier protein signature 231 245 IPR001249 GO:0003989|GO:0006633|GO:0009317
Vvi4g1034 286 PRINTS Acetyl-CoA biotin carboxyl carrier protein signature 214 227 IPR001249 GO:0003989|GO:0006633|GO:0009317
Vvi4g1034 286 SUPERFAMILY Single hybrid motif 211 285 IPR011053 -
Vvi4g1034 286 NCBIfam acetyl-CoA carboxylase biotin carboxyl carrier protein 118 285 IPR001249 GO:0003989|GO:0006633|GO:0009317
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1034 Vvi-Chr4 17142754 17149732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1034 100 286 Acyl Lipid Metabolism Gene Families AT5G15530 60.309 4.55e-66 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1034 K02160 - vvi:100266760 451.44