Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1019 ATGTGCAGTATTAGGCACAGATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCAGTGTATTTCTGTTTAACTCGAAATTTGAATTACTCCTTCAGCAAAGGTCTGCCACAAAGGTGACATTCCCTTTGGTGTGGACAAACACCTGCTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATGTGTCCCGGAATGATCTGAAAGAGCTGTTGAGGAAAGCGGATGCTGGTGAGGAAGGTCTGAAGCTGTCCCCTTGGTTCAGACTGGTGGTCGACAACTTCCTCTTCAAGTGGTGGGACCATGTTGAGAAGGGGACCCTCCTTGAAGCTGCAGATATGAAAACCATTCACAAGTTGACTTGA 663 0.451 MCSIRHRCILVDENDRIVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIPAEDAPVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADVKYVSRNDLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTLLEAADMKTIHKLT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1019 220 FunFam isopentenyl-diphosphate Delta-isomerase I 2 219 - -
Vvi4g1019 220 Pfam NUDIX domain 38 176 IPR000086 -
Vvi4g1019 220 PIRSF Isopentenyldiphpt_isom 2 215 IPR011876 GO:0004452|GO:0008299
Vvi4g1019 220 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 6 219 - -
Vvi4g1019 220 NCBIfam isopentenyl-diphosphate delta-isomerase 8 190 IPR011876 GO:0004452|GO:0008299
Vvi4g1019 220 ProSiteProfiles Nudix hydrolase domain profile. 37 189 IPR000086 -
Vvi4g1019 220 SUPERFAMILY Nudix 7 202 IPR015797 -
Vvi4g1019 220 CDD IPP_Isomerase 5 192 IPR011876 GO:0004452|GO:0008299
Vvi4g1019 220 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1019 Vvi-Chr4 16802127 16806747 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1019 K01823 - vvi:100241072 441.039