Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0998 ATGAAATGGGGTTATTGTTACTTGAGTCCTGGGGTATCATTTGTGAGGTGCCCTCAAATTTTCTCTGTAATTTCCATCACCAAGAAAATCCCGATCACACCTAAATCATACTGGTACAGTTCTTCAACCTTTAGTGATTCCATGAACTACCCAAACTCTGAGGTTCTTCACGCTAAGTTAATCAAGAATGGTTGTGTTGGTATTCGAGGGAACCATCTTCTGAATCTCTATGCGAAATCCCAGAATTTGGAACAAGCACATAAAATGTTTGAAGAAATTCCCCAAACGGATGTCTTCTCATGGACAGTTTTGATTTCGGGTTTTGCTCGAATTGGGTTGTCTGCTGATGTTCTGGGTCTATTCACCAAGATGCAGGATCAAGGTGTATGCCCCAATCAATTCACTTTGTCCATAGTTTTGAAGAGTTGTTCTTCGAATGTGAATGATTCTCGAATTGGGAAGGGAATTCATGGTTGGATTCTGAGGAATGGGCTTGATTTAGACGCTGTGTTGAACAACTCTATCCTTGATTATTATGTGAAATGCAGGTGCTTTGGATATGCAGAGAAGTTGTTTGGTCTGATGGCCGAGAAAGATACTGTGTCTTGGAATATAATGATGAGCTCCTATCTACAGATTGGAGATATGCAAAAGTCTGTTGATCTGTTTAGGCAATTGCCCGGAAAAGATGCTGCAAGTTGGAATACAATGATAGATGGGCTGATGCGAAATGGCTGTGAAAGAGTTGCCTTGGAACTTCTGTATAAGATGGTTGCAGCTGGACCTGCATTCAACAAACTCACCTTCTCCATAGCTTTGGTGTTGGCCTCTTCCTTATCAGTTTTGGGACTAGGGAAGCAGATACATACTCAGGTACTGAAAGTTGGAGTCCTTGATGATGGGTTTGTGAGGAATTCACTGATAGATATGTACTGCAAATGTGGGGAAATGGAAAAGGCGTCGGTGATTTTCAAACACTTGCCTCAAGAATCTTCAATGATGAATTCTGAAGACGTTGTTTCTGCATGTGCAAGTGCTGGGGTTCTGGAGCTTGGCAGGCAGGTCCATGGCTACATTCAGAAAATTGGACATGGACTGGATGTTTTCCTGGGTTCCTCAATCATTGACATGTATGTTAAATGTGGGAGCTTGAATGATGCTTGGTTGATCTTCAACCAAGCTAAAGATCGTAACGTTGTGTTATGGACTTCAATGATATCTGGCTGTGCTTTACATGGACAAGGAAGAGAGGCTGTTCGGCTTTTTGAGCTGATGATCAATGAGGGGATTACACCGAACGAGGTCAGCTTTGTAGGCGTTTTAACTGCCTGCAGCCATGCCGGGCTGCTTGAAGAAGGCTGCAAATATTTCAGATTGATGAGAGAAGTCTATGGCATCAGGCCTGGAGCTGAGCACTTCACCTGTATGGTTGATCTCTATGGCCGAGCTGGTCGCCTAAATGAGATAAAGGAGTTCATTCATAACAATGCCATCTCCAAGCTGAGCTCTGTATGGAGGTCTTTTCTATCTTCTTGTCGAGTCCACAAAAACATCGAGATGGGGATCTGGGTCTGCAAAAAACTACTTGAACTTGAACCATTTGATGCAGGACCTTACATTCTGTTTTCTAGCATTTGTGCCACTGAGCATAGATGGGAAGAGGCAGCTAAAATCAGGAGTCTGATGCAACAGAGAGGGGTTAAGAAAAACCCGAGTCAATCTTGGATTCAGCTGAAGAATCAAGTGCACAGCTTTGTCATGGGAGATAGGTCTCATCCACAGGACACTAAGATTTATTCATACTTAGATGAGCTAATTGGAAGGTTAAAGGAAATCGGGTATTCAACTGACGTCACACCAGTGATGCAAGATGTAGAACAAGAGCAAAGACAAGTGCTACTAGGTTATCACAGTGAAAAACTTGCCATTGCTTATGGCATCATTAGTACTGCTCCTGGAACACCGATCCGGGTCATGAAAAACCTTCGCGTTTGCATTGACTGTCACAACTTTATCAAGTATGCTTCTGAGCTCTTGGGCAGGGAAATAATCATTAGAGACATTCATCGGTTCCATCATTTTAAGCATGGGCATTGCTCCTGTGCAGACTACTGGTGA 2118 0.4297 MKWGYCYLSPGVSFVRCPQIFSVISITKKIPITPKSYWYSSSTFSDSMNYPNSEVLHAKLIKNGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEDVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0998 705 FunFam Pentatricopeptide repeat-containing protein At5g52850, chloroplastic 62 148 - -
Vvi4g0998 705 Pfam E motif 515 577 IPR046848 -
Vvi4g0998 705 Gene3D Tetratricopeptide repeat domain 372 591 IPR011990 GO:0005515
Vvi4g0998 705 Pfam PPR repeat family 97 144 IPR002885 -
Vvi4g0998 705 Pfam PPR repeat family 397 445 IPR002885 -
Vvi4g0998 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Vvi4g0998 705 Gene3D Tetratricopeptide repeat domain 69 152 IPR011990 GO:0005515
Vvi4g0998 705 Gene3D Tetratricopeptide repeat domain 154 281 IPR011990 GO:0005515
Vvi4g0998 705 Pfam DYW family of nucleic acid deaminases 613 705 IPR032867 GO:0008270
Vvi4g0998 705 FunFam Pentatricopeptide repeat-containing protein mitochondrial 370 591 - -
Vvi4g0998 705 Pfam PPR repeat 233 261 IPR002885 -
Vvi4g0998 705 Pfam PPR repeat 71 93 IPR002885 -
Vvi4g0998 705 Pfam PPR repeat 305 327 IPR002885 -
Vvi4g0998 705 Pfam PPR repeat 201 227 IPR002885 -
Vvi4g0998 705 Pfam E+ motif 582 609 IPR046849 -
Vvi4g0998 705 FunFam Putative pentatricopeptide repeat-containing protein 161 289 - -
Vvi4g0998 705 NCBIfam pentatricopeptide repeat 99 132 IPR002885 -
Vvi4g0998 705 NCBIfam pentatricopeptide repeat 201 226 IPR002885 -
Vvi4g0998 705 NCBIfam pentatricopeptide repeat 233 261 IPR002885 -
Vvi4g0998 705 NCBIfam pentatricopeptide repeat 400 434 IPR002885 -
Vvi4g0998 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Vvi4g0998 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Vvi4g0998 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Vvi4g0998 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 339 642 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0998 Vvi-Chr4 16608369 16610633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0998 29 705 Glycoside Hydrolase AT3G49170 34.848 4.00e-139 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0998 K23541 - vvi:100265089 1263.06