Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0971 ATGGCTTTTAGAATTGATCAGGACTCAGAACTAGAGGATATTAAGGAAACCTTGTTTAATTCTGCGATTAAAGGCAAATGGGAAGATGTTGTAGATCTGTACAGGCGACAGCCGAGGGCCCACAAGGCAAAGATGGTTGTATCAGGGGAAACGGCGTTGCATATGGCGGTCTCAGCTGGCAAAGACGATGTAGTTGAACAGCTAGTTGAACTGATAAGTGAGCCCAAGGTGGAAGCTCTCAGTATTGGAAATGATCGAGGAAACACCCCTCTCCATTTAGCTGCATCCATGGGAAATGCTCACATGTGCAGGTATATCTCAGCCATTGATACGCGACTTGTGGCTGCTCGGAATAGGGAAAAGGAAACCCCACTCTTCTTGGCCGCTCTCCATGGTCACACAGATGCTTTTCTTTGGCTTCGAGAAAAATGCTCAAGCAATGAACCGTATGAATACTGTCGACGGGGTGACGGTAAAACAATTCTTCACTGTGCTATAGCTGGAGAATATTTTGATTTGGCAATTCTAATAATTGATCTGTATGAAGATCTTGTTAACTATGTTGACGACAAGGGACTTACCCCTCTCCATGTCCTGGCGAGTAAGCCCACTGCATTCAGAAGCGGGACTCACCTCCATTTCATCGAAAGACTCATTTATGAGTGTAAGTCTCCAAGCATAACCCAAACCACACAACTGAATGACTCAGAAAAAATTGCCAATACCTACTATTTGGTAGCACCTAGAACTCTTTCTGTTCAAGCTTGCATTGCCTGGCCAGAAAAGCAGAAACTAGAGTAA 801 0.4457 MAFRIDQDSELEDIKETLFNSAIKGKWEDVVDLYRRQPRAHKAKMVVSGETALHMAVSAGKDDVVEQLVELISEPKVEALSIGNDRGNTPLHLAASMGNAHMCRYISAIDTRLVAARNREKETPLFLAALHGHTDAFLWLREKCSSNEPYEYCRRGDGKTILHCAIAGEYFDLAILIIDLYEDLVNYVDDKGLTPLHVLASKPTAFRSGTHLHFIERLIYECKSPSITQTTQLNDSEKIANTYYLVAPRTLSVQACIAWPEKQKLE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0971 266 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 22 222 - -
Vvi4g0971 266 SUPERFAMILY Ankyrin repeat 17 200 IPR036770 -
Vvi4g0971 266 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vvi4g0971 266 SMART ANK_2a 48 77 IPR002110 GO:0005515
Vvi4g0971 266 SMART ANK_2a 191 227 IPR002110 GO:0005515
Vvi4g0971 266 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vvi4g0971 266 SMART ANK_2a 120 151 IPR002110 GO:0005515
Vvi4g0971 266 Pfam Ankyrin repeats (3 copies) 83 143 IPR002110 GO:0005515
Vvi4g0971 266 ProSiteProfiles Ankyrin repeat profile. 86 106 IPR002110 GO:0005515
Vvi4g0971 266 Gene3D - 3 145 IPR036770 -
Vvi4g0971 266 ProSiteProfiles Ankyrin repeat profile. 48 70 IPR002110 GO:0005515
Vvi4g0971 266 ProSiteProfiles Ankyrin repeat region circular profile. 48 70 - -
Vvi4g0971 266 Gene3D - 146 237 IPR036770 -
Vvi4g0971 266 ProSiteProfiles Ankyrin repeat region circular profile. 86 106 - -
Vvi4g0971 266 FunFam Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 4 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0971 Vvi-Chr4 15962938 15963850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0971 49 227 Miscellaneous Gene Families AT2G31820 28.415 5.53e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0971 - - vvi:100246246 450.669