Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0968 ATGGTGGTTGCTCATGGTGGCCGATGTGTTGAACGTGTTGTGTTTGGCGATAAGATAACTGATGGAGGAAGAGATGACCTAGAAAAGATTACGAAGATTGCTAGAGAGATGGTAATCAGCCCAGCAAATTCAAGGTTGGGGCTTACTGCTTTGACAAAACGAGTGGGGTTAATGGATAGACCTGATAGTCCAGATGGCGAGTTGATAAAGTACATGTGGGATGACCCTTTTATGATTCCTGCCAACATGACTCTTGAAGTATCTGAGCTGTTCAGTCGAGAATTAACAAGGTACATTGAAGAGACAGAAGAAATTGCAATGAGTGGTTTGAAGGTGAACAGGCACATACTGGATATGATTACAAACGAACTATTGGAAAATTCAAGGATAACTGGATTGGAGGGACCCTTGCCTCACAACGATCGGGTGAGATATCAGCCACTGGACCTATATCCTACTCCACTCCACAGATGTTAA 477 0.434 MVVAHGGRCVERVVFGDKITDGGRDDLEKITKIAREMVISPANSRLGLTALTKRVGLMDRPDSPDGELIKYMWDDPFMIPANMTLEVSELFSRELTRYIEETEEIAMSGLKVNRHILDMITNELLENSRITGLEGPLPHNDRVRYQPLDLYPTPLHRC* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0968 158 Pfam Peptidase family M41 1 131 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g0968 158 SUPERFAMILY FtsH protease domain-like 1 132 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g0968 158 Gene3D Peptidase M41 1 135 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi4g0968 158 PANTHER ATP-DEPENDENT PROTEASE 1 132 - -
Vvi4g0968 158 FunFam Uncharacterized protein 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0968 Vvi-Chr4 15920871 15926129 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0968 K03798 - vvi:100244978 297.745