Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0963 ATGGCTGATCATGCTTTAGTTGTTTCTGATGCTTCCCTTGATCATTCTTTAGTTGTTTCTGATGCTTCCGTTGATCATTCTTTAGTTATTGGGCAAGAATTCCCTGATGTTGAGACTTGCAGAAGAACACTAAAAGATATTGCTATAGCACTGCATTTTGATCTCCGAATCGTGAAATCGGATCGCAGCCGGTTTATAGCCAAGTGCTCCAAGGAAGGTTGTCCATGGCGGGTCCATGTAGCGAAATGTCCTGGAGTTCCAACCTTTTCAATTAGAACACTGCATGGGGTGCATACCTGTGAAGGAGTTCGCAACTGCCATCATCAGCAAGCATCTATAGGTTGGGTTGCAAGATCTGTAGAACAACGAGTTCGGGATAATCCACAATACAAACCAAAGGAAATCCTGCAGGATATACGTGATCAGCATGGTGTTGCAGTGTCTTACATGCAAGCTTGGCGTGGGAAGGAACGCAGCATGGCTGCACTTCATGGAACATTTGAAGAAGGGTATCGCCTTCTTCCTGGATACTGTGAACAAATAAGGAAAACAAATCCTGGAAGCATCGCATCGGTTTTTGCCACAGGACAAGAAAATTGCTTCCAGCGCCTCTTCATTTCCTTCCGCGCATCAATCTATGGATTTATAAATGCTTGTAGGCCACTTTTGGAACTTGACAAGGCACATCTTAAAGGAAAATACTTGGGTACATTACTTTGTGCTGCAGCTGTTGATGCTGATGATGCATTGTTTCCATTGGCAATTGCTATTGTTGACACGGAAAGTGATGAGAATTGGATGTGGTTCATGTCAGAATTGCGGAAGCTTCTTGGAGTAAATACTGACAACATGCCTAGACTTACAATCCTATCTGAAAGACAAAGTGGCATCGTGGAGGCAGTTGAAACACATTTCCCAAGTGCTTCTCATGGCTTCTGTCTACGTTTTATTAGTGAAAATTTCCGTGATACATTTAAAAACACAAAGTTGGTGAATATTTTTTGGAATGCTGTTTATGCACTCACAGCTGTTGAATTTGAAAGCAAGATAACCGAGATGATTGAGATTTCACAAGATGTCATTCCATGGTTTAAGGGCTTTCCACCTCAACTTTGGGCTGTTGCATACTTTGATGGGGTACGGTATGGGCATTTCTCATTGGGGGTCACAGAGTTGTTGTATAAATGGGCTCTTGAATGTCATGAGCTCCCTATTGTGCAAATGATGGAGCATATTCGTCTTCAGTTGACATCTTGGTTTGATGAGCGTCGCAATATGGGTATGAGGTGGACGTCAATTCTAGTACCATCTGCTGAGAAGCGGATTTTGGAGGCGATTGCAGATGCTCATTGCTATCAGGTACTTCGTGCAAATGAAATTGAATTTGAGATTGTGTCAACTGAGCGGACAAACATTGTGGACATACGTAGTCGTGTGTGTTCATGTCGCCGCTGGCAGCTCTATGGTTTACCTTGTGCACATGCTGCTGCAGCACTCATCTCTTGTGGGCAGAATGCCCATCTGTTTGCTGAGCCTTGTTTCACAGTAGCAAGCTACCGGGACACCTATTCACAGATGATAAATCCTGTCCCGGACAAGAGACATTGGAAGGAGCCAGGTGAGGGAGCAGAAGGTGGAGGGGCAAAAGTTGATATCACAATCCGCCCACCCAAGACTCGTCGACCACCTGGGAGGCCCAAAAAGAAGGTCCTACGTGTGGAGAACTTTAAGCGGCCAAAAAGGGTAGTTCAATGTGGTCGTTGTCATATGTTAGGGCATTCTCAAAAGAAATGCACAATGCAAATGTGA 1809 0.4428 MADHALVVSDASLDHSLVVSDASVDHSLVIGQEFPDVETCRRTLKDIAIALHFDLRIVKSDRSRFIAKCSKEGCPWRVHVAKCPGVPTFSIRTLHGVHTCEGVRNCHHQQASIGWVARSVEQRVRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSMAALHGTFEEGYRLLPGYCEQIRKTNPGSIASVFATGQENCFQRLFISFRASIYGFINACRPLLELDKAHLKGKYLGTLLCAAAVDADDALFPLAIAIVDTESDENWMWFMSELRKLLGVNTDNMPRLTILSERQSGIVEAVETHFPSASHGFCLRFISENFRDTFKNTKLVNIFWNAVYALTAVEFESKITEMIEISQDVIPWFKGFPPQLWAVAYFDGVRYGHFSLGVTELLYKWALECHELPIVQMMEHIRLQLTSWFDERRNMGMRWTSILVPSAEKRILEAIADAHCYQVLRANEIEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALISCGQNAHLFAEPCFTVASYRDTYSQMINPVPDKRHWKEPGEGAEGGGAKVDITIRPPKTRRPPGRPKKKVLRVENFKRPKRVVQCGRCHMLGHSQKKCTMQM* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0963 602 PANTHER POLYPROTEIN, PUTATIVE-RELATED 27 570 - -
Vvi4g0963 602 MobiDBLite consensus disorder prediction 532 568 - -
Vvi4g0963 602 ProSiteProfiles Zinc finger SWIM-type profile. 462 503 IPR007527 GO:0008270
Vvi4g0963 602 Pfam MuDR family transposase 27 91 IPR004332 -
Vvi4g0963 602 Pfam SWIM zinc finger 469 502 IPR007527 GO:0008270
Vvi4g0963 602 Pfam MULE transposase domain 223 320 IPR018289 -
Vvi4g0963 602 SMART 26again6 478 505 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0963 Vvi-Chr4 15764692 15766500 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0963 - - vvi:100261536 1196.42