Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0953 ATGGGCTCATTTCACAGAGGGAAAGAACTTCACGGCTTGATTTACAAAATGGGGCTTGAGATGAATGTGTTTGTTGTTACTGCTCTTATTGGCATGTACTCAAAATGCGGGACTGTGAAAGACGTTTGGGATGTGTTTGATAGGATTCCCATCAAGAATGTTGCATCATGGAATGCCATGATTGGATGTTACGGGAAGCATGGTTTGGTTGACTCCTCAATTCAGCTGTTTGAGAGGATGAGAGATTTAGCTAAATTGATGGCCGAGGATATTCTGAGGATGGAGTTGAAAAGACCTGGAGGTTTTGTAACGTTGTCAAATATTTATGCTGCTGATGGAGAGTGGGAAGAGGTTGAGAATATTAGGAAGGTGATGACGGAGTAA 384 0.4219 MGSFHRGKELHGLIYKMGLEMNVFVVTALIGMYSKCGTVKDVWDVFDRIPIKNVASWNAMIGCYGKHGLVDSSIQLFERMRDLAKLMAEDILRMELKRPGGFVTLSNIYAADGEWEEVENIRKVMTE* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0953 127 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 6 98 - -
Vvi4g0953 127 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Vvi4g0953 127 Pfam PPR repeat 56 82 IPR002885 -
Vvi4g0953 127 Pfam PPR repeat 26 50 IPR002885 -
Vvi4g0953 127 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 81 IPR046960 GO:0003723|GO:0009451
Vvi4g0953 127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 53 83 IPR002885 -
Vvi4g0953 127 Pfam E motif 83 125 IPR046848 -
Vvi4g0953 127 NCBIfam pentatricopeptide repeat 56 82 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0953 Vvi-Chr4 15598136 15598789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0953 1 80 Glycoside Hydrolase AT3G49170 38.750 2.32e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0953 - - vvi:104879588 156.762