Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0946 ATGCTTTGCACTGGACTTAATGTGGTAGGCTTCAACTGGATTGCTTCTCCTGCCGCCACTGAACTCGAATCCATTGCGATGGATTGGGTTGGGAAAATGCTCATGCTTCCATCTTCATTTCTTTTCTCAGGAGGTGGTGGCAGTGTCTTGCATGGAAGTACCTGTGAGGCCATACTTTGTAGTTTAGCTGCTCCAAAGGACAAAGTTCTCAAAAAGATTGGCCATCCTAAAATAACTAAGTTGGTGGTCTATGGTTCTGATCAAACACATTCCACCCTTCAAAAGGCCTCCAAGTTGGTCGGTATTCCAACCTCAAATTTTCGAAGCCTCCCCACGTCATTTTCAAATGATTTTGCACTATGCCCAGACGATGTTCACACATCAATGGAGGAGGACATTGGAGTTGGCCTTGTTCCATTGTTTCTTTGTGCCACTGTGGGAACCACATCCTCTGGGGCTGTTGATCCTCTTGAGGCGCTAGGGCACGTCGTAAAGGACTTCAAGCGATTCGAGGCACTTGTAGCCAAAGATCCCAGATTTGAGGTTGTGGTGCCGAGAAGGTTTGCACTGGTGTGCTTCAGACTGAGGCCCAAACAAGAAGGGGAGGACACAGAGCTGAACTCAAGGCTGCTAATGGCTGTTAATGGAAGTGGATGTGCATTCATGACTCATGCAGTGGTGGGTGGGATCTATATCATACGCTGTGCAATTGGCTCCACATTGACTGAGACTAGGCATTTTGACAGTCTGTGGAAGCTCATTCAGGATAAGGCTCAATTGGTACTGCAGGAGCTTGGTTTTGCACTAGAGGAACCCTATTAA 822 0.4732 MLCTGLNVVGFNWIASPAATELESIAMDWVGKMLMLPSSFLFSGGGGSVLHGSTCEAILCSLAAPKDKVLKKIGHPKITKLVVYGSDQTHSTLQKASKLVGIPTSNFRSLPTSFSNDFALCPDDVHTSMEEDIGVGLVPLFLCATVGTTSSGAVDPLEALGHVVKDFKRFEALVAKDPRFEVVVPRRFALVCFRLRPKQEGEDTELNSRLLMAVNGSGCAFMTHAVVGGIYIIRCAIGSTLTETRHFDSLWKLIQDKAQLVLQELGFALEEPY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0946 273 SUPERFAMILY PLP-dependent transferases 168 258 IPR015424 -
Vvi4g0946 273 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 165 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g0946 273 SUPERFAMILY PLP-dependent transferases 1 166 IPR015424 -
Vvi4g0946 273 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 168 264 - -
Vvi4g0946 273 Gene3D - 1 250 IPR015421 GO:0003824
Vvi4g0946 273 PRINTS Aromatic-L-amino-acid decarboxylase signature 46 66 IPR010977 GO:0006520|GO:0016831
Vvi4g0946 273 PRINTS Aromatic-L-amino-acid decarboxylase signature 21 40 IPR010977 GO:0006520|GO:0016831
Vvi4g0946 273 PRINTS Aromatic-L-amino-acid decarboxylase signature 2 20 IPR010977 GO:0006520|GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0946 Vvi-Chr4 15440742 15441925 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0946 K01593 - vvi:100263224 294.664