Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0945 ATGGGCAGCCTCTCTTTCAACACCTTCAGCCCTCTGGATCCACAGAGTTTCTCCGAGGAGTCCAAAATGGTAGTCGATTTCATTGCTGATTACTATAAAAATGTGGAGAAGTACCCGGTTCAAAGCCAAGTTGATCCTGGGTACCTCATGCACCATTGCCCAGACACTGCCCCATATTGTCCAGAGCCCTTGGAAACCATTCTCAAAGATGTATCTGATGGCATCATTCCAGGCCTCACTCACTGGCAGAGCCCCAACTTCTTTGGCTATTTCCAAGCAAATGCTAGCACTGCTGGCTTTCTTGGTGAGATGCTTTGCACTGGACTTAACGTGGTAGGCTTCAACTGGATCGCTTCGCCTGCCGCCACTGAACTCGAATCCATTGTGATGGATTGGGTTGGGAAAATGCTTATGCTTCCACCTTCATTTCTTTTCTCAGGAGGTGGTGGCGGTGTCTTGCATGGAAGTACCTGTGAGGCCATAATTTGTAGTTTAGCTGCTGCAAGGGACAAAGTTCTCAAAAAGCTCGGCCATCATAAAATAACTAAGTTGGTGGTCTATGGTTCTGATCAAACACATTCCACCCTTCAAAAGGCCTCAAAGTTGGTTGGTATTCCAGCCTCAAATTTTCGAAGCCTCCCCACTTCATTTTCAAATTATTTTGCACTATGCCCAGACGATGTTCGCACAGCAATGGAGGAGGACATTGGAGCTGGCCTTGTTCCGTTGTTTCTTTGTGCCACTGTGGGAACCACATCCTCTGGGGCTGTTGATCCTCTGGAGGCGCTAGGGCACGTCGCAAAGGACTTCAAGGTGTGGCTCCACATTGATGCAGCTTATGCAGGAAGTGCCTGTATATGTCCTGAATTCAGGCACCATTTGAATGGGGTTGAACTTGCACACTCGATTAGTATGAACCCCCACAAATGGCTCCTCACCAACATGGACTGCTGTTGTCTATGGATTAAAGAACCAAAGCTATTTGTGGATTCATTATCAACTGCTCCGGAGTTTCTGAGGAACAATGCAAGCGAATCAAAGAAGGTCATAGACTACAAAGATTGGCAAATAGCACTAAGCAGAAGATTCAGGGCCATCAAAGTTTGGGTGGTGATTCGAAGGCATGGCTTGGACAACCTCATGTTCCATATACGCAGCGATGTAAACTTGGCCAAGCGATTCGAGGCACATGTAGCCACAGATCCCAGATTTGAGGCTGTGGTGCCGAGAAGGTTTGCACTGGTGTGCTTCAGACTGAGGCCCAGAGAAGAAGGGGAAAGCACAGAACTGAACTCAAGGCTGCTAATGGCTGTCAATGGAAGTGGTGCTGCATTCATGACTCATGCAGTGGTGGGTGGGATTTACATCATACGCTGTGCAATTGGGTCCACATTGACTGAGACTAGGCATGTTGATAGTCTATGGAAGCTCATTCAGGAAAAGGCTCAACTCGTACTGCAGGAGCCTGGTTTGGCGCTGGAGGAAGACTAG 1491 0.4802 MGSLSFNTFSPLDPQSFSEESKMVVDFIADYYKNVEKYPVQSQVDPGYLMHHCPDTAPYCPEPLETILKDVSDGIIPGLTHWQSPNFFGYFQANASTAGFLGEMLCTGLNVVGFNWIASPAATELESIVMDWVGKMLMLPPSFLFSGGGGGVLHGSTCEAIICSLAAARDKVLKKLGHHKITKLVVYGSDQTHSTLQKASKLVGIPASNFRSLPTSFSNYFALCPDDVRTAMEEDIGAGLVPLFLCATVGTTSSGAVDPLEALGHVAKDFKVWLHIDAAYAGSACICPEFRHHLNGVELAHSISMNPHKWLLTNMDCCCLWIKEPKLFVDSLSTAPEFLRNNASESKKVIDYKDWQIALSRRFRAIKVWVVIRRHGLDNLMFHIRSDVNLAKRFEAHVATDPRFEAVVPRRFALVCFRLRPREEGESTELNSRLLMAVNGSGAAFMTHAVVGGIYIIRCAIGSTLTETRHVDSLWKLIQEKAQLVLQEPGLALEED* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0945 496 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 9 487 - -
Vvi4g0945 496 Gene3D Aspartate Aminotransferase, domain 1 386 492 IPR015422 GO:0003824
Vvi4g0945 496 Pfam Pyridoxal-dependent decarboxylase conserved domain 46 420 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g0945 496 Gene3D - 94 385 IPR015421 GO:0003824
Vvi4g0945 496 FunFam Histidine decarboxylase 93 385 - -
Vvi4g0945 496 SUPERFAMILY PLP-dependent transferases 13 482 IPR015424 -
Vvi4g0945 496 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 302 323 IPR021115 GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 105 123 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 124 143 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 58 77 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 149 169 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 358 373 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 17 36 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 84 103 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 401 420 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 PRINTS Aromatic-L-amino-acid decarboxylase signature 40 57 IPR010977 GO:0006520|GO:0016831
Vvi4g0945 496 Gene3D - 12 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0945 Vvi-Chr4 15400102 15401592 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0945 K01593 - vvi:100240846 996.497