Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0944 ATGAACACCCTCTCCTTGAACAACTTCAGCCCCCTGGATCCACAGAGTTTCCTGGAGGAGTCGAAACTAATAGTCGATTTCATTGCTGATTACTATAGAAATGTGGAGAAGTACCCTGTTCAAAGCCAAGTTAGTTCTGGGTACCTAGTGCACCATTGTCCGGACAGTGCTCCATATTCTCCAGAGCCCTTGGAAAGCATCCTAAAGGAAGTATCAGATAGCATCATTCCAGGCCTCACTCACTTGCAGAGCCCCAACTTCTTTGGCTATTTCCAAGCAAATGCTAGCACTACTGGCTTTCTTGGTGAGATGCTTTGCACTGGACTTAATGCGATAGGCTTCAACTGGATTGCTTCTCCTGCCGCCACTGAACTTGAATCCATTGTGATGGATTGGGTTGGGAAATGCTCATGCTTCCACCTTCATTTCTTCTCTCAGGAAGTGGTGGCGGTGTCATGCATGGAAGTACGTGTGAGGCCTTACTTTATAGTTTAG 495 0.4667 MNTLSLNNFSPLDPQSFLEESKLIVDFIADYYRNVEKYPVQSQVSSGYLVHHCPDSAPYSPEPLESILKEVSDSIIPGLTHLQSPNFFGYFQANASTTGFLGEMLCTGLNAIGFNWIASPAATELESIVMDWVGKCSCFHLHFFSQEVVAVSCMEVRVRPYFIV* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0944 164 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 8 144 - -
Vvi4g0944 164 Pfam Pyridoxal-dependent decarboxylase conserved domain 48 155 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi4g0944 164 SUPERFAMILY PLP-dependent transferases 13 136 IPR015424 -
Vvi4g0944 164 Gene3D - 94 154 IPR015421 GO:0003824
Vvi4g0944 164 Gene3D - 12 91 - -
Vvi4g0944 164 PRINTS Aromatic-L-amino-acid decarboxylase signature 17 36 IPR010977 GO:0006520|GO:0016831
Vvi4g0944 164 PRINTS Aromatic-L-amino-acid decarboxylase signature 40 57 IPR010977 GO:0006520|GO:0016831
Vvi4g0944 164 PRINTS Aromatic-L-amino-acid decarboxylase signature 105 123 IPR010977 GO:0006520|GO:0016831
Vvi4g0944 164 PRINTS Aromatic-L-amino-acid decarboxylase signature 84 103 IPR010977 GO:0006520|GO:0016831
Vvi4g0944 164 PRINTS Aromatic-L-amino-acid decarboxylase signature 124 143 IPR010977 GO:0006520|GO:0016831
Vvi4g0944 164 PRINTS Aromatic-L-amino-acid decarboxylase signature 58 77 IPR010977 GO:0006520|GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0944 Vvi-Chr4 15315051 15315545 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0944 K01593 - vvi:100263224 251.136