Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0931 ATGTTCAACCGTGCAAGGCCCATCTTCCATCTGCTGATACGAAATTCCCCCGCTTCTCCAATCCTCACACACCTCAAAACCCTAACCACGATCACCACCCACCTCCAAAACACTATCACATCAAAGAAAGATGACTATTTTGCAGTTGTCCACCACATTTCCGCCATTGTTCGCCGCGACTTCTACCTTGAACGAACACTCAACAAGCTCCCCATCTCTGTCACCTCTGATCTTGTTTACCGAGTCCTCCGGAGCTGCCCGAACTCTGGCACGGAGTCCCTCCGCTTCTTCAACTGGGCTCGCTCCCACCTTTCCTACCAGCCCACCACCCTCGAGTATGAAGAGCTCCTCAAAACCCTAGCCCGCACCAAGCAATTCCAACCCATGTGGAAAATCGCCCACCAAATGCAGACTCTCTCGCCTACAGTTGTCTCTTCCATCATTGAAGAGTTTGGAAAACATGGCCTCGTCGATCAGGCAGTAGAGGTCTTCAACAAGGCGAAAAGTGCTTTAAATTGCCCCCAAACAATTGAGGTATACAATTCTCTATTGTTTGCCCTTTGTGAAGTCAAATATTTCCACGGTGCATATGCGTTGATTAGGAGGATGATTAGGAAGGGGGTGACTCCGAATAAGCAGACTTATTCCGTGCTAGTGAATGGGTGGTGTGCAGCAGGGAAGATGAAGGAGGCACAGGATTTCTTGGAGGAGATGAGTAGGAAGGGGTTCAATCCACCAGTGCGAGGCCGGGACCTTTTGGTTGATGGGTTGTTGAATGCTGGATATTTGGAAGCTGCAAAGGAGATGGTGAGGAAGATGACTAAGGAGGGGTGTGCGCCAGATGTAGAGACCTTGAATTCAATGTTGGAGGCAATTTGTAAAGCAGGGGAGGCTGAGTTCTGCATTGACATTTATAATGATGTGTGTAGATTAGGAGTTTCTCCCAATGTGGGTACATATAAGATTATGATTCCTGCAGCTTGCAAAGAGGGTAGAATTGATGAGGCCTTTAGGATTTTGCATCGTTCTATTGAGGATGGACATAGGCCATTCCCCAGTTTGTATGCACCAATTATTAAGGCACTTTGTAGGAACGGTCAGTTTGATGATGCATTTTGTTTTTTCAGTGATATGAAGGTTAAGGGGCATCCACCCAACCGGCCAGTTTACACTATGTTGATAACAATGTGTGGGCGGGGAGGTAGGTTTGTGGACGCTGCCAATTATTTGGTGGAGATGACTGAATTGAATTTGACACCAATTTCCCGGTGCTTTGATATGGTCACTGATGGATTGAAGAATTGTGGGAAGCACGACCTGGCTAGGAAGATAGAACAATTAGAAGTGTCTCTTCGGGGTGTATGA 1365 0.4718 MFNRARPIFHLLIRNSPASPILTHLKTLTTITTHLQNTITSKKDDYFAVVHHISAIVRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQTLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMVTDGLKNCGKHDLARKIEQLEVSLRGV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0931 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vvi4g0931 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vvi4g0931 454 Pfam PPR repeat 253 278 IPR002885 -
Vvi4g0931 454 Pfam PPR repeat 145 168 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 319 350 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 253 282 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 355 386 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 284 317 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 389 420 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 214 245 IPR002885 -
Vvi4g0931 454 NCBIfam pentatricopeptide repeat 179 211 IPR002885 -
Vvi4g0931 454 Pfam PPR repeat family 280 329 IPR002885 -
Vvi4g0931 454 Pfam PPR repeat family 357 397 IPR002885 -
Vvi4g0931 454 Pfam PPR repeat family 178 223 IPR002885 -
Vvi4g0931 454 Gene3D Tetratricopeptide repeat domain 85 250 IPR011990 GO:0005515
Vvi4g0931 454 Gene3D Tetratricopeptide repeat domain 254 451 IPR011990 GO:0005515
Vvi4g0931 454 SUPERFAMILY TPR-like 154 408 IPR011990 GO:0005515
Vvi4g0931 454 PANTHER OS01G0970900 PROTEIN 42 413 IPR044578 GO:0008380
Vvi4g0931 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vvi4g0931 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vvi4g0931 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Vvi4g0931 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0931 174 444 Glycosyltransferase AT1G05670 25.461 5.04e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0931 - - vvi:100260382 900.582