Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0930 ATGATGATTTCGCTGCAGAACGATGCTCGCAACCACCACCAGTTGTCGCAGCAGCTGGTGGGTGGGATGTCTAGGGTTTCCTTGAATTCGGATCACCGCGATGAAGCCCCATCCGTGTATGTTGTGAAGCCGGAGGCTTCGCTGAGTCTCAAGCCTTTCAAGACCGAAGCTCATGAAGTTGACGAAGACATGCTGTTGGCACTTGCTCATCAGTCATATAAGGCTGGCAACTATAAACAGTCATTAGATCACTGCAATGCTGTTTATGAGAGAAATTCCCTAAGGACTGATAATCTTCTCCTTATGGGTGCAATTTACTATCAGTTGCACGATTTTGACATGTGTATTGCAAGAAATGAAGAAGCTCTTCAAATTGATCCTCGCTTTGCTGAGTGCTATGGCAATATGGCAAATGCATGGAAGGAGAAGGGCAATGTTGATCTTGCAATTCGCTACTATTTGATCGCTATTGAGCTTCGACCCAATTTCTGTGATGCATGGTCGAACTTAGCTAGTGCATACATGCGAAAAGGAAGGCTCAATGAGGCAGCTCAGTGTTGTCGACAAGCGCTTGCAATAAATCCTCTTTTGGTTGATGCTCATAGCAACCTTGGGAACTTCATGAAAGCACAAGGTTTGATTCAAGAGGCATACAGTTGCTACATTGAGGCGTTACGTATACAACCAAGTTTTGCTATTGCATGGTCAAATCTTGCTGGTCTTTTCATGGAGTCTGGTGATCTTACCAGAGCCCTTCAATATTATAAGGAAGCTGTAAAACTCAAGCCCACATTTGCTGATGCCTACCTAAACCTTGGAAATGTTTATAAGGCTTTGGGAATGCCTCAAGAGGCTATTGTGTGTTACCAACGTGCTCTTCAGACTCGACCAGAGTATGCTATGGCTTATGCAGGTAATATGGCTGCAGGTAATATGGCTGGCACATATTACGAGCAAGGGCAGATGGATATGGCAATTGTCCATTATAAGCAAGCCATTGAGTGTGATTCAGGATTCTTGGAGGCTTACAATAATTTGGGCAATGCATTGAAAGATGTGGGGAGAATAGATGAAGCAATCCAATGCTATCATCAATGCCTGGCTTTACAACCAAACCATCCACAGGCACTTACCAACCTTGGAAATATATATATGGAATGGAACATGGTGGCAGCTGCTGCTACATATTATAAAGCAACATTGGCTGTAACAACAGGGTTGTCTGCTCCTTTCAGCAATCTTGCAATAATATATAAACAACAGGGGAATTATGCAGATGCCATATCCTGCTATAATGAAGTTCTCCGCATTGATCCTTTGGCAGCTGATGGGCTTGTCAATAGGGGCAACACTTTTAAGGAGATTGGCAGAGTAAGTGAAGCGATTCAGGACTATATACATGCTATCACCATCCGGCCAACTATGGCTGAAGCACATGCGAATTTGGCTTCAGCTTATAAAGACAGTGGACATGTTGAGGCTGCCGTGAAGAGCTATAAACAGGCATTGGTTCTACGCCCTGACTTTCCAGAAGCAACTTGTAATCTTCTACACACATTACAGTGTGTCTGCAGCTGGGAGGATCGGGAAAAAATGTTCATTGAAGTTGAGGGGATTATCAGGAGACAAATTAAGATGTCAGTTCTTCCTAGCGTACAACCTTTTCATGCAATAGCATATCCAATTGATCCATTACTTGCTCTTGATATAAGTCGAAAATATGCAGCGCACTGCTCCTTAATTGCATCTCGATATGCTCTTCCTTCCTTCAACCATCCAAATCCTGTTCCTGTGAAGAGTGAAGGTGGAAGTGGGAGGCTAAGGATTGGATATTTAAGCAGTGATTTTGGTAATCACCCCTTGTCACACCTCATGGGTTCTGTATTTGGCATGCACAACAGAGAAAATGTTGAGGTGTTCTGTTACGCCTTGAGTCCAAATGATTCAACTGAATGGAGACAGCGCATTCAGTCAGAAGCTGAGCACTTTATAGATGTTTCTGCCATGTCATCTGATATGATTGCCAAACTGATCAATGAAGACAAGATACAGATCCTTATAAACCTCAATGGTTATACCAAGGGGGCTAGAAATGAAATATTTGCAATGCAGCCTGCACCTATTCAAGTTTCTTACATGGGTTTCCCTGGGACCACGGGTGCAAGTTACATAGATTACTTGGTCACTGATGAGTTTGTGTCACCTTTGTGCTATGCACACATTTATTCGGAGAAGCTTGTTCATCTTCCTCACTGTTATTTTGTAAATGACTACAAACAGAAAAACCGGGATGTTTTAGATCCAAATTGTCAGCACAAGCGATCGGATTATGGTCTGCCGGAAGACAAGTTTATATTTGCATGCTTCAACCAATTGTACAAGATGGATCCTGAAATCTTTAATACTTGGTGTAATATCCTGAAGCGTGTCCCAAACAGTGCTCTTTGGCTCCTCAGATTCCCTGCTGCTGGCGAAATGAGACTTAGATCATATGCTGTTGCTCAGGGTCTGCAGCCAGATCGAATTATTTTCACTGATGTTGCCATGAAACATGAACATATCAGGCGCAGTGCTTTAGCTGATCTATTCCTGGACACGCCTTTATGCAATGCGCACACCACTGGTACAGATATTCTGTGGGCTGGTTTACCAATGGTGACTTTGCCTCTTGAGAAGATGGCAACCAGGGTTGCTGGCTCACTTTGCCTTGCTACTGGACTGGGGGAGGAGATGATTGTCAGCAGTATGAAGGAATACGAAGAGAAGGCTGTCTCTTTGGCCATGAATCGCCCGAAACTGCAGGCACTGACAAATAAACTCAAGGCAGTCCGGATGAGTTGCCCTCTGTTCGACACTGCACGTTGGGTGAGGAATCTAGAAAGGGCGTATTTCAAGATGTGGAATGTCCATTGCTCAGGTTCTCGGCCGCAGCACTTTAAAGTTGCTGAGAATGATGTAGACTTCCCTTGTGACAGATAG 2979 0.4391 MMISLQNDARNHHQLSQQLVGGMSRVSLNSDHRDEAPSVYVVKPEASLSLKPFKTEAHEVDEDMLLALAHQSYKAGNYKQSLDHCNAVYERNSLRTDNLLLMGAIYYQLHDFDMCIARNEEALQIDPRFAECYGNMANAWKEKGNVDLAIRYYLIAIELRPNFCDAWSNLASAYMRKGRLNEAAQCCRQALAINPLLVDAHSNLGNFMKAQGLIQEAYSCYIEALRIQPSFAIAWSNLAGLFMESGDLTRALQYYKEAVKLKPTFADAYLNLGNVYKALGMPQEAIVCYQRALQTRPEYAMAYAGNMAAGNMAGTYYEQGQMDMAIVHYKQAIECDSGFLEAYNNLGNALKDVGRIDEAIQCYHQCLALQPNHPQALTNLGNIYMEWNMVAAAATYYKATLAVTTGLSAPFSNLAIIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTFKEIGRVSEAIQDYIHAITIRPTMAEAHANLASAYKDSGHVEAAVKSYKQALVLRPDFPEATCNLLHTLQCVCSWEDREKMFIEVEGIIRRQIKMSVLPSVQPFHAIAYPIDPLLALDISRKYAAHCSLIASRYALPSFNHPNPVPVKSEGGSGRLRIGYLSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDSTEWRQRIQSEAEHFIDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLCYAHIYSEKLVHLPHCYFVNDYKQKNRDVLDPNCQHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWLLRFPAAGEMRLRSYAVAQGLQPDRIIFTDVAMKHEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGLGEEMIVSSMKEYEEKAVSLAMNRPKLQALTNKLKAVRMSCPLFDTARWVRNLERAYFKMWNVHCSGSRPQHFKVAENDVDFPCDR* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 340 373 IPR019734 GO:0005515
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 96 129 IPR019734 GO:0005515
Vvi4g0930 992 SUPERFAMILY TPR-like 356 856 IPR011990 GO:0005515
Vvi4g0930 992 Gene3D Glycogen Phosphorylase B; 774 946 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat region circular profile. 232 263 - -
Vvi4g0930 992 SMART tpr_5 408 441 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 198 231 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 266 299 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 340 373 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 96 129 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 374 407 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 62 95 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 476 509 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 306 339 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 232 265 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 164 197 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 442 475 IPR019734 GO:0005515
Vvi4g0930 992 SMART tpr_5 130 163 IPR019734 GO:0005515
Vvi4g0930 992 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC 442 480 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 198 231 IPR019734 GO:0005515
Vvi4g0930 992 Pfam Tetratricopeptide repeat 411 439 IPR001440 GO:0005515
Vvi4g0930 992 Pfam Tetratricopeptide repeat 165 195 IPR001440 GO:0005515
Vvi4g0930 992 Pfam Tetratricopeptide repeat 341 373 IPR001440 GO:0005515
Vvi4g0930 992 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC 481 582 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat region circular profile. 266 298 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 408 441 IPR019734 GO:0005515
Vvi4g0930 992 ProSiteProfiles TPR repeat region circular profile. 340 373 - -
Vvi4g0930 992 Pfam Glycosyl transferase family 41 523 761 IPR029489 -
Vvi4g0930 992 Pfam Glycosyl transferase family 41 773 959 IPR029489 -
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Vvi4g0930 992 FunFam Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC 65 440 - -
Vvi4g0930 992 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT 763 985 IPR037919 GO:0006493|GO:0016757
Vvi4g0930 992 SUPERFAMILY TPR-like 101 303 IPR011990 GO:0005515
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Vvi4g0930 992 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC 948 978 - -
Vvi4g0930 992 Pfam TPR repeat 449 490 - -
Vvi4g0930 992 Pfam TPR repeat 242 280 - -
Vvi4g0930 992 Gene3D - 594 773 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Vvi4g0930 992 ProSiteProfiles TPR repeat region circular profile. 408 439 - -
Vvi4g0930 992 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC 783 947 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 164 197 IPR019734 GO:0005515
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 130 163 IPR019734 GO:0005515
Vvi4g0930 992 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Vvi4g0930 992 Gene3D Tetratricopeptide repeat domain 442 479 IPR011990 GO:0005515
Vvi4g0930 992 Gene3D Tetratricopeptide repeat domain 480 582 IPR011990 GO:0005515
Vvi4g0930 992 Pfam Tetratricopeptide repeat 132 160 IPR019734 GO:0005515
Vvi4g0930 992 Gene3D Tetratricopeptide repeat domain 65 439 IPR011990 GO:0005515
Vvi4g0930 992 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC 606 756 - -
Vvi4g0930 992 ProSiteProfiles TPR repeat region circular profile. 476 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0930 Vvi-Chr4 14943811 14962295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0930 243 992 Glycosyltransferase AT3G04240 83.867 0.0 1349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0930 K09667 - vvi:100244912 1989.93