Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0927 ATGGCGTCAGTACTTTATACATATCGCAGTTGTGTTAAAGCTCTTCCTCAGCTTCCTGATTCTATGAAACAAAGTCAAGCTGACTTGTATTTAGAAACTTATCAAGTGCTTGACTTGGAGATGAGTCGTTTGCGTGAAATTCAGAGATGGCAGGCGTCAGCTGCATCCAAACTAGCAGCTGATATGCAACGCTTTTCTAGGCCTGAGCGGCGCATCAATGGCCCTACAATAACTCATCTCTGGTCTATGTTGAAATTACTAGATGTGTTGGTGCAACTTGATCATCTTAAGAATGCGAAAGCAAGCATACCTAATGATTTCTCTTGGTATAAGAGGACATTTACTCAAGTCAGTGTCCATTGGCAAGACACTGACTCAATGAGGGAGGAGTTGGATGATTTACAGATTTTCTTAAGCACGAGATGGGCTATTTTATTGAACTTGCATGTAGAGATGTTCCGTGTGAACAATGTAGAAGACATTCTTCAAGTGCTCATAGTCTTTGCTGTGGAGTCATTAGAGTTGGATTTTGCACTCCTGTTTCCAGAGCGGCATATTCTTCTTCGTGTTTTGCCTGTTCTAGTTGTCTTAGCTACCTCGTCAGAGAAAGATAGCGAGTCACTGTATAAAAGGGTGAAAATCAATAGACTGATCAACATATTCAAGAATGATCCAGTCATCCCTGCATTCCCAGATCTTCATCTTTCTCCTGCTGCAATCTTGAAGGAATTAGCAATGTACTTCCAAAAGTTTTCTACCCAAACTCGTCTTCTCACTCTCCCATCACCTCATGAGCTCCCACCACGAGAGGCACAAGATTATCAGAGACATTACCTGATCATCAATCACATTGGAGCTATTCGTTCTGAACATGATGATTTCACTGTTCGTTTTGCTTTATCCTTGAACCAGTTATTGTTATTGAAATCATCAGATAGTGCAGATGTTGAGTGGTGCAAAGAGGTTAAGGGAAACATGTACGACATGGTTGTTGAAGGTTTTCAGCTTTTAAGTAGATGGACAGCACGGATTTGGGAGCAATGTGCATGGAAATTTTCTCGCCCTTGCAAAGTTTCAGTTCCTATGGAATCATATGAAGCTTCAGGTTCATTTTCTGACTATGAAAAGGTGGTACGATATAATTACAGTGCAGAGGAAAGGAAAGGTCTAGTTGAACTTGTGAGCTACATTAAGAGCATTGGATCAATGATGCAACGGTGTGATACATTGGTGGCTGATGCTTTATGGGAAACAATCCATGCTGAGGTTCAAGATTTTGTGCAAAACACTTTAGCGACTATGTTACGTACTACTTTCCGAAAGAAAAAGGACCTTTCTAGGATTCTTTCTGATATGCGGACCCTTTCAGCAGACTGGATGGCAAATACGAGCAGACCTGAATCTGACTTGCAACCTTTACAGCATGGAGGTGAAGAAAGCAGAGGAACCTTCTTTCATCCAAGGCCCGTTGCACCAACATCGGCACAGGTGCATTGCTTGCAGTTCCTGATATATGAGGTGGTATCTGGTGGCAATCTGAGGAAGCCTGGGGGGCTCTTTGGAAATAGTGGTTCTGAGATTCCTGTTAATGATCTAAAACAGTTGGAAACCTTCTTCTATAAGCTTAGCTTTTTCCTGCATGTGCTGGACTATACAGTGACTGTTGCAACTTTGACTGATCTTGGTTTCCTATGGTTTAGAGAATTTTATTTGGAGTCTTCTCGTGTTATTCAGTTTCCCATTGAATGCTCTCTTCCCTGGATGTTGGTGGATCATGTGTTAGATTCCCAGAATGCTGGTCTTCTTGAGAGTATTCTGATGCCATTTGACATCTATAATGATTCTGCTCAACAAGCATTGGTTGTGCTAAAGCAACGCTTCCTCTACGATGAAATTGAGGCTGAGGTGGACCATTGTTTTGATATATTTGTTTCAAAATTATGTGACAATATTTTCACATACTACAAAAGTTGGGCTGCAAGTGAGCTACTTGATCCATCATTCCTCTTTGCCTTGGACAATGGAGAGAAATATTCTATCCAACCTATGAGGTTCACTGCACTGTTAAAAATGACTAGAGTAAAGTTACTTGGGCGGACAATTGATTTAAGAAGTTTAATTGCCGAACGCATGAACAAAGTATTCAGAGAGAACCTTGAATTTCTCTTTGATCGATTTGAGTCCCAGGATCTCTGTTGCATTGTTGAATTAGAAAAGCTCCTGGATGTTTTAAAACACGCACATGAATTGTTGTCAAAAGATCTTTTAATGGATGCATTCAATCTCATGTTAAGTGAGATGCAAGAGAATATATCTCTTGTTTCATATTCAAGTCGACTTGCTTCGCAGATTTGGATGGAGATGCGAAATGATTTCTTACCAAACTTCATTCTTTGCAATACTACTCAACGTTTTGTTCGGTCATCAAAAGTGCCCTCTGTTCCTGTTCAAAGGCCATCTGTTCCCTCTGCTAAGCCTAATTTCTATTGTGGCACTCAAGATTTAAATTCTGCACATCAAACTTTTGCACAACTTCATAGTGGGTTTTTTGGAATGGCTCATATGTTTTCCATTGTCAGACTTCTGGGGTCCAGATCATTGCCTTGGCTTATCAGAGCTCTTCTTGATCATATATCAAACAAGATAGCAACACTTGAACCGATGATTACAGGACTGCAAGAAGCATTGCCAAAATCTATTGGACTGCTTCCTTTTGATGGAGGTGTAACAGGTTGTATGAGGCTTGTTAGAGAAAATCTTAACTGGGCGTCGAAGCCAGAACTTAAATGTGAGGTTCTTCGTGGAATTAAGGAGATCGGAAGTGTGCTATATTGGATGGGGCTTCTTGATATTGTATTGAGAGAATTAGATACTACACATTTCATGCAAACAGCACCTTGGTTGGGCTTGATTCCTGGTGTAGATGGACAAATATTGCAAGGTCAAGATTGTGGAGACAGCCCTGTTGTCACCTTGTTTAAATCTGCTACTGCTGCAATTGTGTCAAATCCTGGATGCTTAGATCCAACCTCTTTCCATACCCTATCAAAACAGGCAGAAGCTGCCGATCTGTTGTGCAAGGCTAACATGAATACTGGGAGTGTGCTGGAATATGCCCTTGCTTTTACAAGTGCAGCCTTGGATAAATATTGCAGTAAATGGAGTGCTGCTCCAAAGACTGGGTTCCTTGACATCACTACTTCAAAGGACTTCTATCGTATATTCAGTGGCCTTCAGATTGGACACCTGGAGGAGTCTGTTCAATTACCACCAAACAACCATGAAATATTGGGTGATTCTGTTGCTTGGGGTGGTTGTACTATAATATACTTGCTTGGACAACAGCTGCATTTTGAGCTGTTTGACTTTTCATATCAAGTTCTCAATGTTGCAGAAGTGGAGGTTGCAGCACTCATACAAACACATAAGAATCCTCATCTTGCCCAGGGGTGGGAATGCCTATTAGAGGCTATGAAGAAAGCAAGGAGGTTAAACAATCACGTCTTCTCCATGCTGAAAGCGCGGTGCCCCCTGGAAGACAAGGTGGCATGTGCTATTAAGCAAAGTGGCGCCCCTCTGCACCGCATCAAATTTGAAAACACCGTTTCTGCATTTGAAACATTGCCCCAGAAAGGTGTCTGA 3642 0.4146 MASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVHWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVIPAFPDLHLSPAAILKELAMYFQKFSTQTRLLTLPSPHELPPREAQDYQRHYLIINHIGAIRSEHDDFTVRFALSLNQLLLLKSSDSADVEWCKEVKGNMYDMVVEGFQLLSRWTARIWEQCAWKFSRPCKVSVPMESYEASGSFSDYEKVVRYNYSAEERKGLVELVSYIKSIGSMMQRCDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSRPESDLQPLQHGGEESRGTFFHPRPVAPTSAQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPVNDLKQLETFFYKLSFFLHVLDYTVTVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLDSQNAGLLESILMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSKLCDNIFTYYKSWAASELLDPSFLFALDNGEKYSIQPMRFTALLKMTRVKLLGRTIDLRSLIAERMNKVFRENLEFLFDRFESQDLCCIVELEKLLDVLKHAHELLSKDLLMDAFNLMLSEMQENISLVSYSSRLASQIWMEMRNDFLPNFILCNTTQRFVRSSKVPSVPVQRPSVPSAKPNFYCGTQDLNSAHQTFAQLHSGFFGMAHMFSIVRLLGSRSLPWLIRALLDHISNKIATLEPMITGLQEALPKSIGLLPFDGGVTGCMRLVRENLNWASKPELKCEVLRGIKEIGSVLYWMGLLDIVLRELDTTHFMQTAPWLGLIPGVDGQILQGQDCGDSPVVTLFKSATAAIVSNPGCLDPTSFHTLSKQAEAADLLCKANMNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFLDITTSKDFYRIFSGLQIGHLEESVQLPPNNHEILGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEVAALIQTHKNPHLAQGWECLLEAMKKARRLNNHVFSMLKARCPLEDKVACAIKQSGAPLHRIKFENTVSAFETLPQKGV* 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 683 713 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 184 199 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 625 647 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 61 90 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 371 389 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 1070 1086 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 558 576 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 1 1204 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 PIRSF CYFIP 1 1213 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 Pfam CYRIA/CYRIB Rac1 binding domain 84 145 IPR009828 GO:0031267
Vvi4g0927 1213 Pfam Cytoplasmic Fragile-X interacting family 326 1172 IPR008081 GO:0030833|GO:0031267
Vvi4g0927 1213 Coils Coil 734 754 - -
Vvi4g0927 1213 MobiDBLite consensus disorder prediction 463 485 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0927 K05749 - vvi:100253517 2391.69