Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0926 ATGCCTGAACTTCCAGAGGTAGAGGCCGCGAGAAGAGCCGTCGAAGAGCACTGCGTGGGCAAGAAGATTACGAAAGCTGTGATCGCTAATGACTCAAAGGTCATCGATGGAGTCTCTCCTTCAGATTTTGAAGCCTCTCTTCTCGGTAAAACCATTGTCTCTGCCCACAGAAAGGGTAAAAACATGTGGCTCCAGCTCGATTCCCCTCCTTTTCCTTCCTTCCAGTTCGGAATGGCGGGTGCTGTATGTATAAAGGGTGTTGCAGTCACAAAATATAAGAGGTCTGCTGTCAAGGATACTGATGAGTGGCCATCCAAATATTCGAAGTTATTTATTGAAGATTGCACAAGTATATTGGCACAACTTGTGGTTGCCAAATGA 381 0.4619 MPELPEVEAARRAVEEHCVGKKITKAVIANDSKVIDGVSPSDFEASLLGKTIVSAHRKGKNMWLQLDSPPFPSFQFGMAGAVCIKGVAVTKYKRSAVKDTDEWPSKYSKLFIEDCTSILAQLVVAK* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0926 126 Gene3D - 1 119 IPR035937 -
Vvi4g0926 126 FunFam Putative Formamidopyrimidine-DNA glycosylase 1 120 - -
Vvi4g0926 126 Pfam Formamidopyrimidine-DNA glycosylase N-terminal domain 1 112 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Vvi4g0926 126 PANTHER FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1 113 - -
Vvi4g0926 126 CDD PF_Nei_N 1 113 - -
Vvi4g0926 126 SMART Fapy_DNA_glyco_2 2 119 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Vvi4g0926 126 ProSiteProfiles Formamidopyrimidine-DNA glycosylase catalytic domain profile. 2 98 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Vvi4g0926 126 SUPERFAMILY N-terminal domain of MutM-like DNA repair proteins 2 110 IPR035937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0926 Vvi-Chr4 14713136 14729512 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0926 K10563 - vvi:100258664 237.654