Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0925 ATGGCTGCGATTTTTCAAGGGATCGGCGCGGCGGCGGCGGCGGCGGCTCTGCCTCCTGCCGAGAAATTCCACTCACAATCTCCTAGATTCGTCTCAGCGAGGAAAGGAAGTTTGTTTGTGGTAAGATCTGATGGGAGGCCGTCGCTTGGTTCTTCCCCGCGGAGCCGCGGTGCTCAACGCTTGATTACTAATGCAGTTGCAGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATGGATAGAGATCCCCGAGTATGCGTAATGGGTGAAGACGTGGGCCACTATGGAGGCTCCTACAAGGTGACAAAGGGCCTGGCTACAAAGTATGGGGATCTCAGGGTTCTTGACACACCCATTGCTGAAAACTCCTTCACTGGCATGGGCATTGGAGCTGCCATGACTGGGTTAAGGCCGATTATCGAGGGGATGAACATGGGATTTCTCCTTTTAGCTTTCAACCAGATCTCCAACAACTGTGGCATGCTCCACTATACATCTGGTGGCCAGTTCAAAATACCAGTGGTTATCAGAGGACCTGGTGGAGTTGGTCGGCAGCTTGGGGCTGAACACTCACAACGCCTTGAATCATATTTCCAATCAATACCTGGAATCCAAATGGTGGCATGCTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGGAGTGAAAACCCGGTGATCCTTTTTGAGCATGTTTTGCTTTACAATCTCAAGGAGAGGATTCCAGATGAAGAGTATGTGTTATCACTCGAGGAAGCAGAGATGGTAAGACCTGGGGAACATGTCACCATTTTAACCTATTCTAGGATGAGGTATCATGTGATGCAGGCTGCCAAAACATTGGTGAACAAGGGGTATGACCCTGAGGTTATTGATATCAGGTCCTTGAAACCATTTGATCTTTACACGATTGGGAATTCAGTGAAGAAGACACACCGTGTGCTGATTGTGGAGGAGTGCATGCGGACAGGTGGGATCGGTGCCAGTTTGACAGCTGCTATCACTGAGAATTTCATTGATTACTTGGATGCCCCGATTGTTTGTCTGTCATCACAGGATGTGCCCACCCCATATGCTGGGACATTGGAGGAATGGACTGTGGTGCAGCCTTCACAGATTGTGACTGCTGTTGAACAGCTTTGCCAGTAG 1218 0.4975 MAAIFQGIGAAAAAAALPPAEKFHSQSPRFVSARKGSLFVVRSDGRPSLGSSPRSRGAQRLITNAVAAKADASVTSTASKPGHELLLFEALREGLEEEMDRDPRVCVMGEDVGHYGGSYKVTKGLATKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFIDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPSQIVTAVEQLCQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0925 405 Gene3D - 85 272 - -
Vvi4g0925 405 FunFam Pyruvate dehydrogenase E1 component subunit beta 273 405 - -
Vvi4g0925 405 Pfam Transketolase, pyrimidine binding domain 89 259 IPR005475 -
Vvi4g0925 405 SUPERFAMILY TK C-terminal domain-like 268 404 IPR009014 GO:0003824
Vvi4g0925 405 SMART Transket_pyr_3 85 260 IPR005475 -
Vvi4g0925 405 CDD TPP_PYR_E1-PDHc-beta_like 89 255 - -
Vvi4g0925 405 Pfam Transketolase, C-terminal domain 275 396 IPR033248 -
Vvi4g0925 405 PANTHER DEHYDROGENASE RELATED 64 405 IPR027110 GO:0004739|GO:0006086
Vvi4g0925 405 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 88 283 IPR029061 -
Vvi4g0925 405 Gene3D - 273 405 IPR009014 GO:0003824
Vvi4g0925 405 FunFam Pyruvate dehydrogenase E1 beta subunit 82 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0925 Vvi-Chr4 14706857 14709906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0925 1 405 Acyl Lipid Metabolism Gene Families AT2G34590 83.538 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0925 K00162 - vvi:100250049 758.059