Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0883 ATGGCAAAAGCGCCATGCTGTACCTGCTACCTTAGCTCAAATGATTGTGGGATGCTCAGAGGTATTCATACAGATCTGACGTCAGTTATACAAATTGCTTCAATATCTTCCCAAGATTCCCACCCCCGTGTGCGTTGGGCAGCTATCGATTTACTTGAGCAACTCTCCAAGTATTTGTGCCCTCAACTGCAAAATCAGCATCATCAACTTGTCATTCCTCTATTAACAAAAGCTTTGCTTGATTTCCAGAATCCCAGAATACAGGCACATGCTGCTTCAGCAATTTCGTGCTTCAGTCAGAGTTGCACCTCAAGCATCTTAAAACCTCACCTCGATGTTATTATGAGTATGTTACTTAAGCTCCTCCAGAAGGGGAGCCAATCATTGAAAGAGGAAGCTTTAACTGCTTTAGCATCATTAGCTAGTTCATCACAGGAGCACTTTCAAGAGTACTATGTTGCTGTTATGCCATACATAAAAGTTATGTCCATGCAAGGCAAGTCTAATCACAGGCTCCTTGCCAAAGCCATGGAGTGCATTACAATGATTTGGATGGCTGTCGGAAAGGAAATTTGTCGTAAGGATTGTCAAGAGGTTGTAGAACTGCTAATCTCATTGCAGGAATCTCAAATGGAGACAGATGATCCAATGAGAATCTGCATATTAGAAGTATGGGGCAGACTTTGTAAATGCTTAGGGAAAGAGTTCCTTCCTTATATGAATGTTGCTATGCCACATTTACTTCAATCTGCAGATGTATGTCTATGCAGTCTTAACCTACTGGAGGAGAAAGCCTCAGCTTGTAACATGCTCTGTAGTTGTGCTGCTGAGTTGAAGGAAGACTTTCATTTATGGATTGATGAGGTTGCTGACACTTTAATTCCACTTCTCAAATTTAATCTTCATCAAGAAGTTAGAATGGCTGCTGCTTCAGCCATGCCATTGATATTGGATTCGGCTAAATTAGCTGTGGAGAAAGGGCATATTCTAGAAGTTGATGAATCTCCTGTTATGAAACTGTCTGCCCAAATAATACCAGCTATGACGGCAGCTCTATATATGGCAGAAATTTGTGCAAGATTTTTGGGCTCATTGAATGGATGCATACAGATCTCTGGACCTTACCTGACTGACAATGAGGCTAAGTTCCTCATGGATGAGATAACAAAATTCCTCATAGCTAGATCACTTAGAAGACATGCAAGAGAACAAGGTGTAGCACAAGACTCTGATGCAGGAGAGAGAGAACTGCTTAAAGAGGAAAGTGGGAATGAAAAAGAAGTCTATAACAATGTTGGTGATTGCATGGCCACTTTGATCAAAAGATTCAAGCTATCTATAGTGCCCTTCTTTGAAAAGCTTTTAATATGTGTAGCACGTACCTGGTTTAAATCGTTCTGCACTCCCTTTTCTTACCAATTCTTTTCTGTACAGGTTGATAGAACAACTATAGAGAAAAAATTGGCAGTCCGCATTTTTCATGAAGTTGCTGAGCAATGTGGTGAAGAAGCATTAAAGCAAGAATACTTCCTTCAAGTAGCTGCATGGACAATCGGCATTTGTGCAGAGTTTGGTGGATCTTTCTTCAAAACTATTGTTGATGTGGCTCTTTCTAGTCTAAATTCTGTGATAAGCCATCCTAATGCGCTGCAGCCTGATCATGTAATGGTGCATGATGTTGCTGTTTCAGCTCTCGGGAAAATATGCTACTTCCATTATGACAATATCAAGGAAGCTGAGGTGTTGTCTACATGGTTAAGCCATTTACCTATAACAAACTTGTTGAATGAGGCCAAAGTTGCGCACCAGTATCTTTATAGGGTGGTTGAAAGGACAAAAACAGAACCCCTTTCCGTCTATCTTCCTTCAATTATCCGAGTGTTTGCTGAGATTCTATGGGCAGGTAGTAACTTAGCCACTGCACAAACCGTCAGCCAGATGATCGGTCTTTTGAAGAATTCTAAGCAGACATTACCCACTGAATGGGCTTCAATCTGTTCATCCCTGGTTCCCCAGAGAAAGAACTTTTTGCAAGCTATATTGTCTGACACATAG 2055 0.4107 MAKAPCCTCYLSSNDCGMLRGIHTDLTSVIQIASISSQDSHPRVRWAAIDLLEQLSKYLCPQLQNQHHQLVIPLLTKALLDFQNPRIQAHAASAISCFSQSCTSSILKPHLDVIMSMLLKLLQKGSQSLKEEALTALASLASSSQEHFQEYYVAVMPYIKVMSMQGKSNHRLLAKAMECITMIWMAVGKEICRKDCQEVVELLISLQESQMETDDPMRICILEVWGRLCKCLGKEFLPYMNVAMPHLLQSADVCLCSLNLLEEKASACNMLCSCAAELKEDFHLWIDEVADTLIPLLKFNLHQEVRMAAASAMPLILDSAKLAVEKGHILEVDESPVMKLSAQIIPAMTAALYMAEICARFLGSLNGCIQISGPYLTDNEAKFLMDEITKFLIARSLRRHAREQGVAQDSDAGERELLKEESGNEKEVYNNVGDCMATLIKRFKLSIVPFFEKLLICVARTWFKSFCTPFSYQFFSVQVDRTTIEKKLAVRIFHEVAEQCGEEALKQEYFLQVAAWTIGICAEFGGSFFKTIVDVALSSLNSVISHPNALQPDHVMVHDVAVSALGKICYFHYDNIKEAEVLSTWLSHLPITNLLNEAKVAHQYLYRVVERTKTEPLSVYLPSIIRVFAEILWAGSNLATAQTVSQMIGLLKNSKQTLPTEWASICSSLVPQRKNFLQAILSDT* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0883 684 SUPERFAMILY ARM repeat 479 667 IPR016024 -
Vvi4g0883 684 PANTHER IMPORTIN BETA 25 656 IPR040122 GO:0006606
Vvi4g0883 684 Gene3D - 16 681 IPR011989 -
Vvi4g0883 684 Pfam Importin repeat 6 358 458 IPR041389 -
Vvi4g0883 684 SUPERFAMILY ARM repeat 36 522 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0883 Vvi-Chr4 13311651 13319110 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0883 K20222 - vvi:100245009 1189.1