Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0882 ATGGATTCCAAACAATCTCTTCAAGGTGCTTTTGTTTCATTCATTGAGAGGCGACGTAGGTCACTCTCTTCAATCCCTTCAGTCATTGTGATTGGTGGCGGTATTTCAGGGATAGCTGCTGCCCATACTCTTCATAATGCATCTTTTCAGGTGGTCTTGTTGGAATCACGGGATAGACTTGGCGGCCGCATTCATACTGATTACTCACTTGGTTGTCCAGTAGATATGGGAGCATCATGGCTTCATGGTGCTTGCAATGAGAATCCCTTGGCTCCATTGATATGTCGTCTGGGCCTTACATTATATCGTACTAGTGGGGATGATTCTGTGTTGTATGACCATGATTTGGAAAGTTGCACACTTTTTGATATGGATGGTCATCAAGTTCCTCAGAAGATGGTTGTTGAAGTTGGAGAGACATTCAAGAAAATTCTGAAAGAGACAGAGAATGTAAGGATTGAACATTGTGATGATATGTCTGTTCTACAAGCAATTTCTATTGTGCTGGATAGGCACCCAGAGTTGAGACAAGAAGGGCTTGCCAATGAAGTGTTGCAATGGTATATTTGTAGAATGGAGGCTTGGTTTGCTGTTGATGCAGATATGATATCACTGAAAAGTTGGGATCAGGAGCATATTCTTTCTGGTGGTCATGGACTTATGGTACAAGGTTACGACCCAATAATAAAGACCCTCTCTAAAGATCTCGATATACGTTTGAATCATAGGGTTACAAATATATCCTATGGGTGTAAAAAGGTGGTGGTCACTGTTGAGGGTGGAAGGAACTTTGTTGCAGATGCTGCCATTATAACTGTTCCCATTGGAATTCTTAAAGCCAATTTAATCGAGTTCAAGCCAAAATTGCCTGATTGGAAGGTTAATGCAATTTCAGATATTGGTGTGGGCAATGAAAATAAGATTGCACTACGATTTGATGATGTTTTTTGGCCAAATGTGGAACTGTTGGGCATTGTTGCTCCCACTTCTTATGCCTGTGGTTATTTTCTCAATCTTCACAAAGCAACAGGTTATCCCATTCTTGTTTATATGACTGCTGGAAGTTCTGCTTGTGGTCTTGAGAAGCTATCTGATGAGTGTGCTGTAAATTTCGTGATGTTGCAGCTCAAGAAAATGTTTCCTGATGCAACTAAGCCCGTTCAGTATCTTGTATCACGGTGGGGAACTGACCCAAACTCGCTTGGTTGTTATGCACATGATGTGGTTGGAAAGCCCGAAGATTCATATGAGAGGCTTCTAGAACCCTTGGACAATCTTTTCTTTGGAGGGGAAGCTGTTAGCTTGGACCACCAGGGATCTGTTCATGGGGCTTACTCAGCTGGAATTATGGCTGCTGAAAACTGTCAAAGGTATATCTTGGAGAGACGGGGAAACTTGGAAAAGCTCCAGCTTGTCTCTCTTAGGAGTGCAATTCATGAGGCTGCAGTCCCCCTCCAGATATCAAGGATGTGA 1473 0.4257 MDSKQSLQGAFVSFIERRRRSLSSIPSVIVIGGGISGIAAAHTLHNASFQVVLLESRDRLGGRIHTDYSLGCPVDMGASWLHGACNENPLAPLICRLGLTLYRTSGDDSVLYDHDLESCTLFDMDGHQVPQKMVVEVGETFKKILKETENVRIEHCDDMSVLQAISIVLDRHPELRQEGLANEVLQWYICRMEAWFAVDADMISLKSWDQEHILSGGHGLMVQGYDPIIKTLSKDLDIRLNHRVTNISYGCKKVVVTVEGGRNFVADAAIITVPIGILKANLIEFKPKLPDWKVNAISDIGVGNENKIALRFDDVFWPNVELLGIVAPTSYACGYFLNLHKATGYPILVYMTAGSSACGLEKLSDECAVNFVMLQLKKMFPDATKPVQYLVSRWGTDPNSLGCYAHDVVGKPEDSYERLLEPLDNLFFGGEAVSLDHQGSVHGAYSAGIMAAENCQRYILERRGNLEKLQLVSLRSAIHEAAVPLQISRM* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0882 490 PANTHER FLAVIN MONOAMINE OXIDASE 26 460 - -
Vvi4g0882 490 SUPERFAMILY FAD/NAD(P)-binding domain 27 458 IPR036188 -
Vvi4g0882 490 Gene3D - 28 453 IPR036188 -
Vvi4g0882 490 Pfam Flavin containing amine oxidoreductase 35 453 IPR002937 GO:0016491
Vvi4g0882 490 SUPERFAMILY FAD-linked reductases, C-terminal domain 301 406 - -
Vvi4g0882 490 Gene3D - 107 412 - -
Vvi4g0882 490 PRINTS Flavin-containing amine oxidase signature 27 46 IPR001613 GO:0016491
Vvi4g0882 490 PRINTS Flavin-containing amine oxidase signature 201 223 IPR001613 GO:0016491
Vvi4g0882 490 PRINTS Flavin-containing amine oxidase signature 386 405 IPR001613 GO:0016491
Vvi4g0882 490 PRINTS Flavin-containing amine oxidase signature 437 454 IPR001613 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0882 Vvi-Chr4 13197530 13217135 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0882 K17839 - vvi:100250153 956.822