Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0880 ATGGTTATGCTCTTCCCTATGTCATTGAGTGGTGCTGCACAGCGTTGGTTCGCTTCATTGGAGGTATCACGTCGTAGGACTTGGGATGACTTAGCCCAGGAGTTTTTGAGACAGTTTGCATTTAACGTTGTCATTGATGTTTCGAGGAGAGAGTTAGAGGCTTTGAGACAGAGGCCGGAGGAGTCAGTCACTTCATTTATCTCCCGCTGGAGGGAGAAGATTTCACAGATTATAGACCGTCCTTCAGAGAGAGATCAGATTAGCATGATCATGAGGAGCTTGCAGCCTAGATTTGCTAGACACTTGATGGGATTTCCCCATACGGATTTCGGATCTTTGGTACAGGCTTTGTATGGTATAGAGGAGGGCATTGCTAGAGGATTATGGTCTGAGTCTTCCCCTACTGATTCTAAGGGGAAAAGGCCTTCAGGAGGACAGAGATCAGGAGATGTTGGTGCTATCAGTTCAGTAGGGATGAGACCTTCTAGACGCTATCAGACAGTTAAGCAAACTACTGGGTACTACTATCCACCTTCACCTCATGCGCATTACAGACCACCCACTCCTTCCAGACCTATGACTCCTACTTATCTGCATCCGGACTCACAGCCTGTTTTTGCTGCACACGTCGCAGAGAGGCCTCCTGCCCCATATACTCGACCCCGAGCTCCACAGACCACTACTTATGTGCAGAGGCCACCACATCAGTTTGCTCAGTTGGGTATGCCTTTGAGTCGAGCTTTTCAGAAGCTCACAGAGGGTGGATTATTGATTCCATTAGCATCCAGGCCTTTACCCCAGCCTATACCACCTCGCTTCAGGATGGACTTACATTGTTCCTACCATCAGGGACCAGGGCATGACACAAACCATTGCACTGCTTTGAGACATGCTATTCAGGACTTGATAGACCAGGGTTTGGTCAACTTGGGGCAGCCAAGTGTGACCACTAACCCTCTTCCTGCTCATTCTACACACGCAGTGCATCCATCTTCAGGAGATATTCATCACATGGACCTTATAGAGGATGACAGTATACACATGTTGAGTTGGGATGATGGATTAACCGAGCCGATTGTTTTGCACGACAGTTATGAGGTTGATGGGGTTTCAGTGGTCCCTCAAACTCCTGCACCATTCAGTTTGATCCCGGACGAGGCACCATTCCAGTTGACTCATCCTACACCCTTAGTTATCGGATGTCAGGATGCTTTTGTCCCATTCACTTTATGGCCAGAAGATGATGATTCAGAGGAGAGAGAGGTACAGATTGTGACTCGTAGTGGGAGGATAGCTCGGCCACCACCACCAACAGTCAGACCATTTGAGGGTGCAGCCTCTCATGAGGAGGTTAGGAGAGAGGATGATGAGGTTTTGAGACAGCTACAGAGCACTCAGACTCGCATTTCCATCTGGAGTTTATTAGCATCATCCTGTACTCATAGAGATGCTTTGATTCGAGCCTTGAGTCAGATCAGAGTAGAGACTACCACCACTCCAGAGGGATTGATTCATATGATGATGGCTGGCAAAGCCACTTGCATTGTATTTTCAGATGATGACTTGCCACCTGATGGTTTAGACCACGTGCGCCCTCTATACATCACAGTGGGATGTTCAGGCCGTAGAGTCCCATCTGTCCTACTGGACAACGGCTCAGCCCTGAATGTTTGCCCTTTAGCCACTGCTATAGCCCTTGGTTTCGCGCCTTCAGATTTTGGTCCTTCTACTCAGACAGTCATGGCGTATGATAGCACCAAGAGGGAGGTTATGGGTACCTTGATGATTGATTTGCAGATTGGTCCAGCCACATTTTCCACTTTGTTCCAGGTTTTGAGGATTCCTACATCCTTTAACCTACTACTAGGCCGACCATGGATTCATGTAGTTGTAGCTATTCCTTCTTCCCTTCATCAGAAGGTGAAGTTTATTCATGATGGGCAGGTCATCACAGTGCGCTCTACCAGGGATATATTTGTCGCTTCTGATCCAGTACTTCAGATCAGTCATAGTGAGGACGACCTACTTCTGACTGGGTTTACTTTCGATGAGATACAGACTCTCGAGATTGAGGATTTTTGTAGAGACTTTGTGGCTATGTCGTTTGATCAGCACAGTAGCACAGTGGTTCTTGATATGATGAGGGGTATGACCTTTCTACCTGGCATGGGGTTAGGACGACGTCAGCAGGGACTGAGAGAGTTCATAGCTACCATTGACCATGATACGACATTTGGACTTGGATTCATCCCTACTGAGGTCGATTACCGTCACATGGCGTGGCTGCGCAAGGAGAGGGTGAGAGCCCGTTTATCCCACACACCATTTGATTATCCTATTCGACCCTATAGGATGAGTTTGGCTGACTACTTTGTCAGAGGATCAGAGACTCGACCTTGTCTAGAGGAGATTGATAGTGTGGTTCATACAGATAGAGAGACCGAGCTTCAGCATCTATTTCACCAGCTACAGTTGAGTGATGGGGCTCCCGACTTTTCTTTCCCTTTGACGATTACTCCCACGTCTCCAGATCGAGCTAGCATGTTGTCTCTATGCTTTCCAGAGGAGATCACTGGTGATGGGGTGATGGTTGATTCTACTGAGATGATTGATGGAGTTGTTTCCCATGATGAGTACCGAGATGAGATGGACATGATGACCATGAGCCAGATTACCAGCATTGTTCAGCTTCAGCCTGTTTCAGCATTTGATATGTTTGGGGTGTCTACCATTGAGGTTTTTGAGGGAACTCAGACTCTTCCTGTTCCAGAGCTTCCAGAGGATGATAGTAGCTTGTTTGAGGGCGTTGTTAGCCTAGTTGAGGGAGCGTCCGACCTTGTGGACCCACCTCTTTCTTTTGATGTTTTATCGGGATTTGTCTCCCGCTCTGACGATGTTTCTGTTGCTTCATTTATGGATTTGAGTATTTTTTAG 2934 0.4748 MVMLFPMSLSGAAQRWFASLEVSRRRTWDDLAQEFLRQFAFNVVIDVSRRELEALRQRPEESVTSFISRWREKISQIIDRPSERDQISMIMRSLQPRFARHLMGFPHTDFGSLVQALYGIEEGIARGLWSESSPTDSKGKRPSGGQRSGDVGAISSVGMRPSRRYQTVKQTTGYYYPPSPHAHYRPPTPSRPMTPTYLHPDSQPVFAAHVAERPPAPYTRPRAPQTTTYVQRPPHQFAQLGMPLSRAFQKLTEGGLLIPLASRPLPQPIPPRFRMDLHCSYHQGPGHDTNHCTALRHAIQDLIDQGLVNLGQPSVTTNPLPAHSTHAVHPSSGDIHHMDLIEDDSIHMLSWDDGLTEPIVLHDSYEVDGVSVVPQTPAPFSLIPDEAPFQLTHPTPLVIGCQDAFVPFTLWPEDDDSEEREVQIVTRSGRIARPPPPTVRPFEGAASHEEVRREDDEVLRQLQSTQTRISIWSLLASSCTHRDALIRALSQIRVETTTTPEGLIHMMMAGKATCIVFSDDDLPPDGLDHVRPLYITVGCSGRRVPSVLLDNGSALNVCPLATAIALGFAPSDFGPSTQTVMAYDSTKREVMGTLMIDLQIGPATFSTLFQVLRIPTSFNLLLGRPWIHVVVAIPSSLHQKVKFIHDGQVITVRSTRDIFVASDPVLQISHSEDDLLLTGFTFDEIQTLEIEDFCRDFVAMSFDQHSSTVVLDMMRGMTFLPGMGLGRRQQGLREFIATIDHDTTFGLGFIPTEVDYRHMAWLRKERVRARLSHTPFDYPIRPYRMSLADYFVRGSETRPCLEEIDSVVHTDRETELQHLFHQLQLSDGAPDFSFPLTITPTSPDRASMLSLCFPEEITGDGVMVDSTEMIDGVVSHDEYRDEMDMMTMSQITSIVQLQPVSAFDMFGVSTIEVFEGTQTLPVPELPEDDSSLFEGVVSLVEGASDLVDPPLSFDVLSGFVSRSDDVSVASFMDLSIF* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0880 977 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 35 330 - -
Vvi4g0880 977 SMART G-patch_5 704 750 IPR000467 GO:0003676
Vvi4g0880 977 MobiDBLite consensus disorder prediction 430 452 - -
Vvi4g0880 977 MobiDBLite consensus disorder prediction 129 163 - -
Vvi4g0880 977 ProSiteProfiles G-patch domain profile. 706 752 IPR000467 GO:0003676
Vvi4g0880 977 Gene3D Acid Proteases 523 650 IPR021109 -
Vvi4g0880 977 CDD retropepsin_like 535 628 - -
Vvi4g0880 977 Pfam Retrotransposon gag protein 4 95 IPR005162 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0880 Vvi-Chr4 13126794 13129727 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0880 - - vvi:100854167 1389.79