Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0879 ATGCCAATGGTAAAGAGATCTGCTGCATCAAATCTGGGAAAGTTTGCTGCTACTGTTGAAGCTGCTCATTCAAAGGCTGACATCATGTCAATATTTGAGGATCTGACACAAGATGATCAAGATTCTGTTAGGTTATTGGCTGTTAAGGGTCGTGCAGCTCTCGAAAAACTGTTGGAACCTCAAGATTGTGTAGCACATATTCCTCTCATAAATTATGAATTTCTCTCAGGATAA 234 0.3974 MPMVKRSAASNLGKFAATVEAAHSKADIMSIFEDLTQDDQDSVRLLAVKGRAALEKLLEPQDCVAHIPLINYEFLSG* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0879 77 Gene3D - 1 72 IPR011989 -
Vvi4g0879 77 ProSiteProfiles HEAT repeat profile. 28 66 IPR021133 -
Vvi4g0879 77 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1 67 - -
Vvi4g0879 77 SUPERFAMILY ARM repeat 2 69 IPR016024 -
Vvi4g0879 77 FunFam Uncharacterized protein 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0879 Vvi-Chr4 13122628 13122861 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0879 K03456 - vvi:100266203 120.553