Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0870 ATGGCGGCGATTCCGAAGCCCTCCATTACCACTGTCGACAACGAGGAGGGAATCGCTCGTCGATTCTGGATCAAGTTCCGGAAAGAATCGATTTTCGCTATGTACACTCCGTTCGTGGTCTGTTTGGCTTCCGGGAATCTCAAGCTCGACTCTTTCCGGCATTTTATTGCTCAGGATGTTCACTTTCTCAGGGCCTTCGCTCAGGCATACGAGTTGGCGGAGGAGTGTGCAGATGATGATGATGCAAAGTTAGGGATCTGCCAGCTAAGGAAGAGTGTATTGGAGGAACTGAAAATGCATGATTCATTTGTTAAGGAATGGGGTTTTGACCTGTCCAAAGAGAGCTCTCTTAACTCTGCAACAGTGAAATACAGAGACTTTTTGCTGGCAACAGCTTCTGGGAAAATTGAAGGAGTAAAAGGCCCTGGTAAACTAGCGACGCCTTTCGAGAAAACAAAAGTTGCAGCTTATACTCTAGGTGCCATGACACCTTGCATGAGGCTGTATGCCTTTCTGGGTAAGGAGCTTCAGGCACTTCTACACCCTAGTGAAAGCACTCACCCTTACAAGAAGTGGATTGACAACTATTCTTCTGAAGGTTTCCAGGGTTCAGCTTTACAAACTGAGGACTTGCTGGATAAACTAAGTGTCTCTTTGACAGGCGAAGAGCTTGACATCATAGAAAAGCTTTATTACCAAGCTATGAAACTTGAAATAGAGTTCTTCTGTGCTCAGCTGCTTGATCAGTACACTATAGTTCCTCTAACTAAAGGGCATGACCCTGCAGCAGATCGTCTTGTGATATTTTCTGATTTTGATTTGACATGTACAGTTGTTGACTCTTCTGCCATTTTGGCAGAGATTGCAATAATAACAGCACCAAAATTTGATCAGAATCAACCTGAAAATCAAATTATTCGGATGTCCTCAGCTGACTTGAGGAACACATGGGGTGTTCTATCCAAGCAGTATACTGAAGAGTATGAGCAATGTATAGAAAACATTCTGCCATCTGAGAAAGTGGAGGAATTTGACTATGAAGGCCTGTGTAAAGCACTTGAGCAGCTTTCAGATTTTGAAAAAAGGGCAAACTCTAGAGTGATTGAGTCTGGAGTACTTAAGGGTCTAAATCTTGATGACATAAAACGAGCTGGAGAACGTCTAATTCTTCAAGATGGTTGTGCAAGTTTCTTTCAGAACATTGTAAAGAATGAAAGTTTGATTGCAGATGTCCATATACTTTCATATTGTTGGTGTGGTGATCTTATCAGGTCAGCATTTTCGTCAGGGGGTTTACATGTTCTGAACGTGCATGCAAATGAGTTCGCTTTCAAGGAGTCTATTTCCAATGGTGAAATTGTTAAAAATGTGGAGTCTCCCATTGACAAGCTTAAAGCTTTCCTCAATATCCTAGAGAACTGCAGCAATGACAGAAAGAACTTGACTGTCTATATTGGAGACTCTGTGGGTGACTTACTTTGCCTGCTTAATGCAGATGTAGGCATAGTGATTGGGTCAAGCTCAAGTCTAAAGAGAGTGGGCAGTCAATTTGGAGTTTCGTTTGTTCCATTGTTTCGTTTCTTGGTTAAGAAACAGAAAGAATATGTTGAAGGAAGTTCCTCTCGCTGGAAGGGGCTATCCGGAACTCTTTACACAGTCTCTAGCTGGGCTGAAATACATGCCTTCATTTTGGGGTGGTAG 1701 0.4268 MAAIPKPSITTVDNEEGIARRFWIKFRKESIFAMYTPFVVCLASGNLKLDSFRHFIAQDVHFLRAFAQAYELAEECADDDDAKLGICQLRKSVLEELKMHDSFVKEWGFDLSKESSLNSATVKYRDFLLATASGKIEGVKGPGKLATPFEKTKVAAYTLGAMTPCMRLYAFLGKELQALLHPSESTHPYKKWIDNYSSEGFQGSALQTEDLLDKLSVSLTGEELDIIEKLYYQAMKLEIEFFCAQLLDQYTIVPLTKGHDPAADRLVIFSDFDLTCTVVDSSAILAEIAIITAPKFDQNQPENQIIRMSSADLRNTWGVLSKQYTEEYEQCIENILPSEKVEEFDYEGLCKALEQLSDFEKRANSRVIESGVLKGLNLDDIKRAGERLILQDGCASFFQNIVKNESLIADVHILSYCWCGDLIRSAFSSGGLHVLNVHANEFAFKESISNGEIVKNVESPIDKLKAFLNILENCSNDRKNLTVYIGDSVGDLLCLLNADVGIVIGSSSSLKRVGSQFGVSFVPLFRFLVKKQKEYVEGSSSRWKGLSGTLYTVSSWAEIHAFILGW* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0870 566 Pfam TENA/THI-4/PQQC family 156 246 IPR004305 -
Vvi4g0870 566 Pfam TENA/THI-4/PQQC family 37 134 IPR004305 -
Vvi4g0870 566 SUPERFAMILY Heme oxygenase-like 35 242 IPR016084 -
Vvi4g0870 566 Gene3D - 265 517 IPR023214 -
Vvi4g0870 566 FunFam Bifunctional TH2 protein, mitochondrial 8 246 - -
Vvi4g0870 566 CDD TenA_C_AtTH2-like 18 244 - -
Vvi4g0870 566 SUPERFAMILY HAD-like 259 522 IPR036412 -
Vvi4g0870 566 Gene3D - 18 245 IPR016084 -
Vvi4g0870 566 PANTHER BIFUNCTIONAL TH2 PROTEIN 13 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0870 Vvi-Chr4 12153112 12196511 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0870 K22911 - vvi:100266835 1117.06