Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0866 ATGGAGCTCGCCAACGCCCGGAGCGCACTCAAGCGCAAACGAGACGACGCCATTGAACCCTTCGACAACGGCACCGCCGCCACCGCCACCACCGACGCCTCCTCTGTTGACCTCTCTCTCCTGGAGGCCGTAGAGAAGTCACAAACCACTGTGGAAGTTCTCGACCTCAAAACCCTAAAAAGGCTGGTCCTCGCCTTCGAGCGCCGTCTCCGTGACAATATCGAAGCCCGTTTGAAATACCCGGATCAACCCGATAAGTTCGCTGACTCCGAAATTGAGCTCCACGAGGAGATCCAACGCCTTAAGACCCTCGCCGGTGGCCCTGAACTTTATCCCGATTTGGTAAATCTCAACGTGATCCCTTCTATTCTCGGCTTGTTGTCGCACGACAACTCCGACATCGCCGTCGACGTCGTTGGGCTCCTCCAAGACCTCACGGACGAGGACGTGTTGGAGGACAATGACGAGCCGGCTAGGGTTTTGGTGGACGCGTTGATTGAGAATAATGTCTTGGAGCTTCTGGTTCAGAATCTGACCCGGTTGTCGGAGTTCGACCCGGATGAGATGGCCGCGGTCTATGCTACCCTCGCCACCCTTGAGAATTTGATTGAGGTGAAGCCGGCTGTGGCGGAGATGGTGTGCGAGAGGACTAAGCTGATGCGGTGGCTGTTGGGAAAGATAAAGGTGAGGGAGTTCGATAGTAATAAGCAGTATGCATCGGAGATTTTGGCCATTTTGTTGCAGAACAGTGCAGCAAATCAGCGGCGGTTGGGGCAGATGAATGGGGTTGATGTGGTGCTTCAGGCGGTGGCAATGTACAAGTCACGGGACCCGAAGACGGCAGATGAGGAGGAGATGGTGGAGAATTTGTTTGATTGCTTGTGTTGCTTGTTGATGCCGTTGGAGAATAAAGAAAGATTCGTCAGAGCTGAGGGGGTTGAGTTGATGATCATTATTATGAAGCAGAAGAAGTTGGCTTATGGCTCCGCCATAAGAGCACTTGATTTTGCGATGACAAAGTATCCACCCGCATGCGAGCGGTTTGTGGATGTGTTGGGTTTGAAGACTGCATTTGCGGCTTTCATGGGTAAGATTCCTATGAGCAAGAAGAATAAGAAAGAACGCTACCAAGAAGAGTTAGAAGAGCGTATTATATCATTGATTGCATCATTATTTGGTGGAATCTTGAGGGGTTCTAGAAGGGATAGATTGTTGAGTAAGTTTGTGGAAAATGAGTGTGAAAAGATAGACCGTCTTATGGAACTTTACATAAGATATTCGGACAGAGTTAAAGCTGAGACCGAACGGATGAACCAACTTAAACTTGATGATTTAGAGATGGATGAAGATGAAAGATACAACCGACGGCTGGAGGTTGGACTTTACACTCTTCAGTTGATTTCAATCATTCTGGGTCATCTTTGGTCTTCTGAGAATCCCCGGATGCAAGCGAGAATTGAACTACTACTCAACCAGCAAAGAATTACCAAAGAGGACATCAAAGATATACTTCAGGAATATCATGACAACATTGGAGATGTTGATGGACAGGAGGAAAAGGAGCGTGCACAGGCAAAGATCCAAAAGTTCATCTCAGCCTTTTGA 1605 0.4885 MELANARSALKRKRDDAIEPFDNGTAATATTDASSVDLSLLEAVEKSQTTVEVLDLKTLKRLVLAFERRLRDNIEARLKYPDQPDKFADSEIELHEEIQRLKTLAGGPELYPDLVNLNVIPSILGLLSHDNSDIAVDVVGLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNLTRLSEFDPDEMAAVYATLATLENLIEVKPAVAEMVCERTKLMRWLLGKIKVREFDSNKQYASEILAILLQNSAANQRRLGQMNGVDVVLQAVAMYKSRDPKTADEEEMVENLFDCLCCLLMPLENKERFVRAEGVELMIIIMKQKKLAYGSAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMGKIPMSKKNKKERYQEELEERIISLIASLFGGILRGSRRDRLLSKFVENECEKIDRLMELYIRYSDRVKAETERMNQLKLDDLEMDEDERYNRRLEVGLYTLQLISIILGHLWSSENPRMQARIELLLNQQRITKEDIKDILQEYHDNIGDVDGQEEKERAQAKIQKFISAF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0866 534 FunFam Beta-catenin-like protein 1 isoform A 52 534 - -
Vvi4g0866 534 PANTHER BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN 8 533 IPR039678 -
Vvi4g0866 534 Gene3D - 52 534 IPR011989 -
Vvi4g0866 534 SUPERFAMILY ARM repeat 98 432 IPR016024 -
Vvi4g0866 534 SMART DUF1716_2 33 139 IPR013180 -
Vvi4g0866 534 Pfam Catenin-beta-like, Arm-motif containing nuclear 41 505 IPR013180 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0866 Vvi-Chr4 11913809 11938167 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0866 K12864 - vvi:100241064 1007.28