Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0864 ATGGCCAAGAGCGTTCTCATCCTCTGCGGCGATTACATGGAAGACTATGAGGTGATGGTTCCCTTTCAAGCGTTGCTGGCCTACGGAGTCTCCGTCCACGCCGTTTGCCCTGGAAAGAAAGCCGGCGACGTCTGCCGGACTGCTGTTCATCAGGGCCTTGGTCATCAGACTTATTCTGAGTCACGGGGTCACAACTTCACAGTCAATGCAACCTTTGATGAGTTAATCTTGGCAGCTTCAGGCTCAGTCAGAGGACGGAAGTGCACAGCTTACCCTGCTGTGGGACCTGCACTCATTGCTGCAGGAGCTCATTGGGTAGAACCTGAGACCATGTCAGCATGTGTTATTGATGGTAACCTTATTACTGCAGCAACTTACATAGGTCATCCTGGGTTCATCCAGCTTTTTGTAAAAGCACTAGGAGGCACCATAACTGGTTCAGATAAACGGATTCTATTTTTGTGTGGGGATTACATGGAAGACTATGAGGTAATGGTCCCTTTTCAATCCTTTCAAGCTCTTGAATGCCATGTTGATGCGGTTTGCCCGAAGAAGAAGGCCGGTGAGACCTGTCCAACTGCTATTCATGATTTTGAAGGTGATCAAACTTACAGTGAGAAGCCAGGCCATGATTTCACTCTAACAGCCACTTTTGAAGATCTAAACATCCCAAGCTATGATGCTCTTGTTATACCTGGAGGCCGAGCCCCAGAATATTTGGCATTAAATGAGAAAGTAATTGCCTTAGTGAAGGAATTCATGGAGGCAGGAAAGCCAGTTGCATCCATTTGCCACGGACAACAGATTTTAGCTGCTGCTGGAGTTCTCAAGGGAAAGAAATGCACTGCATATCCTGCTGTGAAACTCAATGTAGTCTTGTCTGGGGCTACATGGTTAGAACCTGAGCCAATAGATCGCTGTTTCACAGATGGAAATTTGGTAACTGGAGCTGCTTGGCCGGGCCATCCAGAGTTCATCTCTCAGTTGATGACGTTGCTCGGTATCCAGGTCTTGTTCTAG 1020 0.4765 MAKSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESRGHNFTVNATFDELILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQLFVKALGGTITGSDKRILFLCGDYMEDYEVMVPFQSFQALECHVDAVCPKKKAGETCPTAIHDFEGDQTYSEKPGHDFTLTATFEDLNIPSYDALVIPGGRAPEYLALNEKVIALVKEFMEAGKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVVLSGATWLEPEPIDRCFTDGNLVTGAAWPGHPEFISQLMTLLGIQVLF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0864 339 CDD GATase1_PfpI_1 150 333 - -
Vvi4g0864 339 Gene3D - 145 339 IPR029062 -
Vvi4g0864 339 Gene3D - 76 144 IPR029062 -
Vvi4g0864 339 Gene3D - 1 75 IPR029062 -
Vvi4g0864 339 PANTHER DJ-1 PROTEIN 74 338 IPR006286 -
Vvi4g0864 339 Pfam DJ-1/PfpI family 149 331 IPR002818 -
Vvi4g0864 339 Pfam DJ-1/PfpI family 75 138 IPR002818 -
Vvi4g0864 339 Pfam DJ-1/PfpI family 3 74 IPR002818 -
Vvi4g0864 339 ProSiteProfiles PfpI endopeptidase domain profile. 149 334 IPR006286 -
Vvi4g0864 339 NCBIfam DJ-1/PfpI/YhbO family deglycase/protease 151 333 IPR006286 -
Vvi4g0864 339 SUPERFAMILY Class I glutamine amidotransferase-like 149 333 IPR029062 -
Vvi4g0864 339 SUPERFAMILY Class I glutamine amidotransferase-like 1 140 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0864 Vvi-Chr4 11866269 11879082 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0864 K18881 - vvi:100247956 674.855